suba logo
AT1G05060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK3NeggNOG:ENOG41125QHEMBL:AC005322EMBL:AK227488
EMBL:BT004608EMBL:CP002684EnsemblPlants:AT1G05060EnsemblPlants:AT1G05060.1
entrez:839336GeneID:839336Gramene:AT1G05060.1hmmpanther:PTHR36704
KEGG:ath:AT1G05060OMA:VEPLRTWPhylomeDB:Q9ZVP0PIR:F86184
Proteomes:UP000006548RefSeq:NP_563727.1TAIR:AT1G05060TMHMM:TMhelix
UniGene:At.42419UniProt:Q9ZVP0
Coordinates (TAIR10) chr1:-:1451255..1452858
Molecular Weight (calculated) 27839.30 Da
IEP (calculated) 10.03
GRAVY (calculated) -0.54
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFLGAGRLA GKEAAYFFQE SKHAVNRLAE KSPATGKKLP SSPPDPPEIQ PDVLPEILRH SLPSKIYGRP PDPSSLSQFS KWALESDPNA TVSISPDVLN
101: PLRGYVSLPQ VTFGRRRWDL PESENSVLAS TANELRRDRY GTPVNPEKLK AAGEGLQHIG KAFAAATIII FGSATLVFGT AASKLDMRNA DDIRTKGKDL
201: FQPKLESMKE QVEPLRTWAE NMSKKWHIEN EGGNTIKEKP ILKELSKILG PKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)