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AT1G04660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 360 Blast hits to 349 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JV8IeggNOG:ENOG4110650EMBL:AB493432EMBL:AC002376
EMBL:AK229628EMBL:BT008567EMBL:BT008680EMBL:CP002684
EnsemblPlants:AT1G04660EnsemblPlants:AT1G04660.1entrez:839454GeneID:839454
Gramene:AT1G04660.1KEGG:ath:AT1G04660OMA:HKGASGEPIR:E86179
Proteomes:UP000006548RefSeq:NP_563714.1TAIR:AT1G04660TMHMM:TMhelix
UniGene:At.42438UniProt:O23018
Coordinates (TAIR10) chr1:-:1300668..1301306
Molecular Weight (calculated) 18313.50 Da
IEP (calculated) 8.92
GRAVY (calculated) 0.55
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRALSVVCV LLAISFVCAR ARQVPGESDE GKTTGHDDTT TMPMHAKAAD QLPPKSVGDK KCIGGVAGVG GFAGVGGVAG VGGLGMPLIG GLGGIGKYGG
101: IGGAAGIGGF HSIGGVGGLG GVGGGVGGLG GVGGGVGGLG GVGGLGGAGL GGVGGVGGGI GKAGGIGGLG GLGGAGGGLG GVGGLGKAGG IGVGGGIGGG
201: HGVVGGVIDP HP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)