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AT1G02310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 762 Blast hits to 752 proteins in 193 species: Archae - 9; Bacteria - 223; Metazoa - 4; Fungi - 190; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G02310-MONOMERCAZy:GH5EC:3.2.1.78eggNOG:COG3934
eggNOG:ENOG410IIG3EMBL:AC064879EMBL:AY081352EMBL:BT002154
EMBL:CP002684EnsemblPlants:AT1G02310EnsemblPlants:AT1G02310.1entrez:839444
Gene3D:3.20.20.80GeneID:839444Genevisible:Q9FZ29GO:GO:0005576
GO:GO:0016985GO:GO:0046355Gramene:AT1G02310.1hmmpanther:PTHR31451
hmmpanther:PTHR31451:SF14HOGENOM:HOG000169952InParanoid:Q9FZ29InterPro:IPR001547
InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT1G02310KO:K19355
OMA:KEMASYVPaxDb:Q9FZ29Pfam:PF00150Pfam:Q9FZ29
PhylomeDB:Q9FZ29PIR:D86153PRIDE:Q9FZ29PRO:PR:Q9FZ29
ProteinModelPortal:Q9FZ29Proteomes:UP000006548RefSeq:NP_171733.2SMR:Q9FZ29
SUPFAM:SSF51445TAIR:AT1G02310tair10-symbols:MAN1UniGene:At.23486
UniGene:At.42610UniProt:Q9FZ29
Coordinates (TAIR10) chr1:-:458243..460652
Molecular Weight (calculated) 46292.90 Da
IEP (calculated) 5.76
GRAVY (calculated) -0.25
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MLNILPFFLF FLPFLIGNNR ICVAVKTGFV GRNGTQFVLN GEQVYLNGFN AYWMMTTAAD TASKGRATVT TALRQASAVG MNVARIWGFN EGDYIPLQIS
101: PGSYSEDVFK GLDFVVYEAG RFNIKLIISL VNNFEDYGGR KKYVEWAGLD EPDEFYTNSA VKQFYKNHVK TVLTRKNTIT GRMYKDDPTI FSWELINEPR
201: CNDSTASNIL QDWVKEMASY VKSIDSNHLL EIGLEGFYGE SIPERTVYNP GGRVLTGTDF ITNNQIPDID FATIHIYPDS WLPLQSSRTG EQDTFVDRWI
301: GAHIEDCDNI IKKPLLITEF GKSSKYPGFS LEKRNKFFQR VYDVIYDSAR AGGSCTGGVF WQLTTNRTGL LGDGYEVFMQ AGPNTTAQLI ADQSSKLKNL
401: KYPPLVTHSA E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)