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AT5G62550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY4HeggNOG:ENOG410YHT2EMBL:AB015469EMBL:AK229459EMBL:CP002688EnsemblPlants:AT5G62550EnsemblPlants:AT5G62550.1
entrez:836375GeneID:836375GO:GO:0005886Gramene:AT5G62550.1hmmpanther:PTHR34468hmmpanther:PTHR34468:SF1HOGENOM:HOG000152504
KEGG:ath:AT5G62550OMA:THIKLAEPhylomeDB:Q9FJJ1Proteomes:UP000006548RefSeq:NP_201061.1STRING:3702.AT5G62550.1TAIR:AT5G62550
UniGene:At.29044UniGene:At.332UniProt:Q9FJJ1
Coordinates (TAIR10) chr5:-:25105839..25107875
Molecular Weight (calculated) 53427.40 Da
IEP (calculated) 9.70
GRAVY (calculated) -0.86
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSMEKSVS SAASGNSINS KLRYPLRSAL RSKEGKPPVP DFSASSMPRR ARVVSAVSQS TTVLDLSGKK SVDRTKLPPR RLSIPNKPTS NSSVKSVSSS
101: VTSLSEVKPK RSRIVPRSFN ETTTPVSSNL RSSVTRKKVE DLSSSTYWLT HIKLAESVAK HSISLGFFKL ALHAGCEPLD KMKEELKLYA RRNNMDGLAD
201: AMKELSELYN ISEESNQVQV SETSSVVAEE TAMSLNNDND VQSSFSTPGN SNITSEITKD DALQDSTVTK TTKEKDALQD SSVTETTKEK DALQDSSVTE
301: TSKEEGALQD SSVTETTKEE DALQDSSVTE TTKEEQALET VTQGRTRKSL EVINVNQEND SEVVQESEEG LRPSADGVQI VTVVKPSDKK RARKETVPKN
401: NLPVRTKKSL ATNSANSKTV QVNKDDKSQK KSERITKPRT KRVQEESKKS IKKSTAKEGE VKSLKQTEKM ENKENTVVVG AGEDIQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)