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AT5G62150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peptidoglycan-binding LysM domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT4G25433.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J13KeggNOG:ENOG410Z8I0EMBL:AB016880EMBL:BT012512EMBL:BT014812EMBL:CP002688EnsemblPlants:AT5G62150
EnsemblPlants:AT5G62150.1entrez:836335GeneID:836335Gramene:AT5G62150.1hmmpanther:PTHR33648hmmpanther:PTHR33648:SF1HOGENOM:HOG000243548
KEGG:ath:AT5G62150OMA:ASNSIRGPhylomeDB:Q9FIS3Proteomes:UP000006548RefSeq:NP_201021.1SMR:Q9FIS3STRING:3702.AT5G62150.1
TAIR:AT5G62150TMHMM:TMhelixUniGene:At.29068UniProt:Q9FIS3
Coordinates (TAIR10) chr5:+:24958325..24958633
Molecular Weight (calculated) 11280.50 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.07
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGSRTGSSD MSAWCSAVVL LSLILLLSVR ENNASNSIRG SQFSTKPCEE IYIVGEGETL HTIGDKCGDP FIVERNPHIH DPDDVFPGLV LKIAPFYFNR
101: KL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)