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AT5G50960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleotide binding protein 35
Curator
Summary (TAIR10)
Highly similar to Saccharomyces cerevisiae NBP35, locus YGL091C. Cytosolic protein that homodimerizes and can assemble both 4Fe-4S - type and 2Fe-2S - type clusters on its amino terminal and carboxy therminal respectively. Null mutants are embryo lethal.
Computational
Description (TAIR10)
nucleotide binding protein 35 (NBP35); CONTAINS InterPro DOMAIN/s: Mrp, conserved site (InterPro:IPR000808), ATPase-like, ParA/MinD (InterPro:IPR019591); BEST Arabidopsis thaliana protein match is: IND1(iron-sulfur protein required for NADH dehydrogenase)-like (TAIR:AT4G19540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20415eggNOG:COG0489eggNOG:KOG3022EMBL:AB017063EMBL:AF360309EMBL:AY142635EMBL:CP002688
EnsemblPlants:AT5G50960EnsemblPlants:AT5G50960.1entrez:835169Gene3D:3.40.50.300GeneID:835169Genevisible:Q8H1Q2GO:GO:0005524
GO:GO:0005829GO:GO:0016226GO:GO:0042803GO:GO:0046872GO:GO:0051536GO:GO:0051539Gramene:AT5G50960.1
HAMAP:MF_02040HAMAP:MF_03038hmmpanther:PTHR23264HOGENOM:HOG000079916InParanoid:Q8H1Q2InterPro:IPR000808InterPro:IPR019591
InterPro:IPR027417InterPro:IPR028601KEGG:ath:AT5G50960OMA:ARSYPDSPANTHER:PTHR23264PaxDb:Q8H1Q2Pfam:PF10609
Pfam:Q8H1Q2PhylomeDB:Q8H1Q2PRIDE:Q8H1Q2PRO:PR:Q8H1Q2PROSITE:PS01215ProteinModelPortal:Q8H1Q2Proteomes:UP000006548
RefSeq:NP_568748.1scanprosite:PS01215SMR:Q8H1Q2STRING:3702.AT5G50960.1SUPFAM:SSF52540TAIR:AT5G50960tair10-symbols:ATNBP35
tair10-symbols:NBP35UniGene:At.67723UniGene:At.6964UniProt:Q8H1Q2
Coordinates (TAIR10) chr5:+:20734267..20735824
Molecular Weight (calculated) 37308.10 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.02
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGDIPEDA NEHCPGPQSE SAGKSDSCAG CPNQEACATA PKGPDPDLVA IAERMSTVKH KILVLSGKGG VGKSTFSAQL SFALAGMDHQ VGLMDIDICG
101: PSIPKMLGLE GQEIHQSNLG WSPVYVEDNL GVMSIGFMLP NSDEAVIWRG PRKNGLIKQF LKDVYWGEID YLVVDAPPGT SDEHISIVQY LLPTGIDGAI
201: IVTTPQEVSL IDVRKEVSFC KKVGVPVLGV VENMSGLSQP LKDVKFMKLA TETGSSINVT EDVIACLRKN APELLDIVAC SEVFDSSGGG AERMCREMGV
301: PFLGKVPMDP QLCKAAEQGK SCFEDNKCLI SAPALKSIIQ KVVPSTVMTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)