AT5G49030.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.697 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNA synthetase class I (I, L, M and V) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ovule abortion 2 (OVA2); FUNCTIONS IN: in 6 functions; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Plant disease resistance response protein (InterPro:IPR004265), Isoleucyl-tRNA synthetase (InterPro:IPR018353), Isoleucyl-tRNA synthetase, class Ia (InterPro:IPR002301), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Isoleucyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015905), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA glycosylase/AP lyase/isoleucyl tRNA synthetase, zinc finger domain (InterPro:IPR010663), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT5G49040.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19875091..19883251 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 143398.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1279 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSKLILILTA QILLLTATAL AGKNGEDFAR TINRKHLGLG KKEKLTHLRV YWHDIVTGRN PSSIRIQGPV AKYSSSSYFG SITMIDNALT LDVPINSTVV 0101: GQAQGMYVGA AQKEIGLLMA MNLAFKTGKY NGSTITILGR NTVMSKVREM PVVGGSGMFR FARGYVEART KLFDMKTEAT ERNLKQMSSF FKSFAGNPRE 0201: AAAMAMVQSS SYRVLSGKSC SNLRRNTPLD SFLAKGRSSV KAFSFLYVSR FSTEPNNEFG HSSKRRSRGP VMAAKKASEG EKQEDGKYKQ TVDLPKTGFG 0301: MRANSLTREP ELQKLWEENQ VFKRVSDNNN GGSFILHDGP PYANGDLHMG HALNKILKDI INRYKLLQNY KVQYVPGWDC HGLPIELKVL QSLDQEVRKE 0401: LTPLKLRAKA AKFAKATVKT QMESFKRFGV WADWNNPYLT LDPEYEAAQI EVFGQMALKG YIYRGRKPVH WSPSSRTALA EAELEYPEGH ISKSIYAIFK 0501: LVGGAKTSLL DEFIPNIYLA VWTTTPWTMP ANAAVAVNAK LQYSVVEVQS FSEDESTVTS NKKKIPGKVL KNQQKLFVIV ATDLVPALEA KWGVKLSISK 0601: TFLGSDLENC RYTHPIDNRD CPVVIGGDYI TTESGTGLVH TAPGHGQEDY ATGLKYGLPL VSPVDDEGKF TEEAGQFRGL SVLGEGNTAV VSYLDENMSL 0701: VMEESYAHKY PYDWRTKKPT IFRATEQWFA SVEGFRTATM DAINNVKWVP HQAVNRISAM TSSRSDWCIS RQRTWGVPIP AFYHVKTKEP LMNEETINHV 0801: KSIISQKGSD AWWYMSVEDL LPEKYRDKAA DYEKGTDTMD VWFDSGSSWA GVLGKREGLS FPADVYLEGT DQHRGWFQSS LLTSIATQGK APYSAVITHG 0901: FVLDEKGMKM SKSLGNVVDP RLVIEGGKNS KDAPAYGADV MRLWVSSVDY TGDVLIGPQI LRQMSDIYRK LRGTLRYLLG NLHDWRVDNA VPYQDLPIID 1001: QHALFQLENV VKNIQECYEN YQFFKIFQII QRFTIVDLSN FYFDIAKDRL YTGGTSSFTR RSCQTVLSTH LLSILRVIAP IVPHLAEDVW QNLPFEYRNE 1101: DGSAAEFVFE LKWPTLNEQW LSFPAEDVLF WQRLLELRTE VNKVLELARN EKMIGSSLEA KVYLHTADAG MAAKLLEMSE AKNEADTLQR IFITSQVEVL 1201: SSMEKEMISS VQHTGEYVEG ENKVWIGVSR AEGSKCERCW NYSGQVGSFS DHPTLCGRCF SVIVANPPEP AVAAVNSLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)