AT5G43310.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : COP1-interacting protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
COP1-interacting protein-related; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17379883..17385387 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 128839.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.66 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||
| Length | 1164 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKSSTRLDSV AFQLTPTRTR CDLLVTANGK TEKIATGLLD PFLAHLKTAK DQLEKGGYSI ILKPEASDNA AWFTKGTIER FVRFVSTPEV IERVYTLETE 0101: IIQIKEAIGI QNNSEMALTV VKDDHRAKKA DSAEGSRPLL QLNEEKAIVL YEPDSHPKQA NRSTSSDENS KAQVMKVLET RKIMLQKEQG MAFARAVAAG 0201: FEADDMIPLI SFAKTFGASR LMDACVKFMD LWKKKHETGQ WVEIEATEVM ATQPNISTMN DSGIMFANAA NMPGTPENSD AKSPTDNKRN GNQEYVQGQH 0301: RQPMYAPWPV HSPPGTFPVF QGYTMQGMPY YPGYPGASPY PSPYPSTDDS RRGSGQRKAR KHHSSCSEDS ESEDQERDNE KSSRRRKSGK VVIRNINYIN 0401: SKKQDNSGTE SDADDNHEEV ARGECYNGKE RATKGTEADT GDWQAFQTFL LQDADRDERS IDHMMEKEIR GKKRQGTGKY DPLAHGERES GKYQERDTAD 0501: IRNGSVTRRI RGSSDSLMVH QRENGFENSS DPLNMNGFDT PRNGLDKRNM DDDSYIVTRV SSARDEAGRN KRNAIDIGSE ISSCYQTDGN ERKQVNYEPH 0601: DLSLIPERET EKLSAGYDPA LEFGSKALKK NSQAAGGAKK LVKDPKSRLS KDAADKRKAP GPIRKGRPTK MSPLDEARAR ADKLRNFKAD LQKMKKEKEE 0701: EDRKRIEALK IERQKRIASK SNSAVGQSQL PAQQTKKQIL NKFSPGSRAS KFSDSEPGSL SPLQRLPRRT TSLGSNDFQK FPKNGKLSTV SKSTGNMLTR 0801: SISPLPPAKR ESIATGIRLT RSISPLPLSK RETRVSLDTQ NKSVSQTRRL SEPKMGNTSA PSSSVRPRRT IASRKASDAP EIKKLSAIVN YDIAKIASLP 0901: ELKIKPTKGP SNVMVKGVEK TKSSASGIEP SGNKNKSLCQ NDIDETPVVE KTVVMVLPSS ARSISRDQVK NEKSDVVSEN STIREGVDKE GIVETMQECG 1001: NDLVLVRLET LSDLVTETPK FLTSQSIVAK PYEAPYARVS SLEDPCTVYS DCSQAPPPSL YSNETEQETV KVLVPEKKIS EASEKSQTKE SASKGLRKLL 1101: KFGKKSQSSS VSEHHTESNN ASFNSNEDHE PAVTAATTSE AFTLKNLISQ DETPTAAAAS QKCK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)