AT5G27640.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.984 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : translation initiation factor 3B1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of eukaryotic translation initiation factor 3B family. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
translation initiation factor 3B1 (TIF3B1); FUNCTIONS IN: nucleic acid binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, eukaryotic translation initiation factor 3 complex, nucleus; EXPRESSED IN: guard cell, cultured cell, seed; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3B-2 (TAIR:AT5G25780.1); Has 966 Blast hits to 959 proteins in 251 species: Archae - 0; Bacteria - 19; Metazoa - 298; Fungi - 315; Plants - 111; Viruses - 6; Other Eukaryotes - 217 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:9781207..9784759 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84918.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 738 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD 101: TKMTLGYCFI EFNTPQKGAQ TRLFLMVEYF LRVSLNVWGS LQEAQNAKEK SHGYKLDKSH IFAVNMFDDF DRLMNVKEEW EPPQARPYVP GENLQKWLTD 201: EKARDQLVIR SGPDTEVFWN DTRQKAPEPV HKRPYWTESY VQWSPLGTYL VTLHKQGAAV WGGADTFTRL MRYQHSMVKL VDFSPGEKYL VTYHSQEPSN 301: PRDASKVEIK VFDVRTGRMM RDFKGSADEF SIGGPGGVAG ASWPVFRWAG GKDDKYFAKL SKNTISVYET ETFSLIDKKS MKVDNVVDIC WSPTDSILSL 401: FVPEQGGGNQ PAKVALVQIP SKVELRQKNL FSVSDCKMYW QSSGEYLAVK VDRYTKTKKS TYSGFELFRI KERDIPIEVL ELDNKNDKII AFAWEPKGHR 501: FAVIHGDQPR PDVSFYSMKT AQNTGRVSKL ATLKAKQANA LFWSPTGKYI ILAGLKGFNG QLEFFNVDEL ETMATAEHFM ATDIEWDPTG RYVATAVTSV 601: HEMENGFTIW SFNGIMLYRI LKDHFFQLAW RPRPPSFLTA EKEEEIAKTL KKYSKKYEAE DQDVSLLLSE QDREKRKALK EEWEKWVMQW KSLHEEEKLV 701: RQNLRDGEVS DVEEDEYEAK EVEFEDLIDV TEEIVQES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)