AT5G19390.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.781 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rho GTPase activation protein (RhoGAP) with PH domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Rho GTPase activation protein (RhoGAP) with PH domain; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: Rho GTPase activation protein (RhoGAP) with PH domain (TAIR:AT5G12150.2); Has 4537 Blast hits to 4371 proteins in 246 species: Archae - 4; Bacteria - 47; Metazoa - 3286; Fungi - 432; Plants - 222; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6531906..6538069 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90763.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.29 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 822 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEASLAALER PRGSASNTVF KSGPLFISSK GLGWTSWKKR WFILTRTSLV FFKNDPGTLP QKGGEVNLTL GGIDLNNSGS VVVREDKKLL TVLFPDGRDG 101: RAFTLKAETF EDLYEWKTAL EQALAQAPNA ALIMGQNGIF RAETNEAIEG REKRPLKSLV VGRPILLALE DIDGSPSFLE KALQFIEKYG TKIEGILRQS 201: ADVEEVERRV QEYEQGKTEF TFDEDPHVVG DCIKHVLREL PSSPVSASCC TALLEAYRIE SKEARISSLR SAIAETFPEP NRRLLQRILK MMHTISSHSH 301: ENRMNPNAVA ACMAPLLLRP LLAGECDLED DFDGGEDNSA QLLAAANAAN NAQAIITVLL EDYGSIFDEE NIQRCSISTE SHIGNSGPDD SSDDDNNMKN 401: GYHNADNEVE PVTDDDNDRA LSGKMSESSG CTGSDLYEYK GFVADDSDIE SPRDTNGPRC NSNIRTDHLM RNPFVNSTDQ QAGEQIGDDP TKYGVNSCLA 501: HVSESYQQSG TGLNVPTHGN TLAAPGLESP SAKSVNKGTP SSVHAKRATF WGRGSARKIS TDGSFDSSGE DELAIQRLET TKNELRQRIA KEARGNAILQ 601: ASLERRKQAL HERRLSLEQD VSRLQEQLQA ERDLRAALEV GLSMSSGQFS SHGVDSKTRA ELEEIALAEA DVARLKQKVA ELHHQLNQQR QTHFGSFSDA 701: RDTHQYLQNH NPQKRFLQQD FDSTLAYVNH ERKQRHEENV LGAEWRNSKG AGSFGVGNSR QPSRKQIPES TNTTDSKISE ESGKISVDKL SSIDSPSIPS 801: TSRVLDSTQG LIIRQLLHQQ LW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)