AT5G16300.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.690 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vps51/Vps67 family (components of vesicular transport) protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Vps51/Vps67 family (components of vesicular transport) protein; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5338119..5342186 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114970.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.43 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||
| Length | 1034 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRMSSASAGE YRPSAVSLSS NGGGQRDAES LFRTKPMSEI RIVESATRKN IEDKKEELRQ LVGTRYRDLI DSADSIVHMK SLCESISANI SSIHGNIRSL 0101: SSSSVAETPK LASLNPVRVN VYGIACRVKY LVDTPENIWG CLDESMFLEA AGRYMRAQHV QQRLIKLEGC GGGVAEVDQS KLLANFPLLE HQWQIVESFK 0201: AQISQRSHER LLDPGLGLGA YVDALTAVAV VDELDPEQVL ELFLDSRKTW ILQKLNACTG EDAGEVVLVF CDVLSVIQVT VGQVGELFLQ ALTDMPLFYK 0301: TILSTPPASQ LFGGIPNPEE EVELWKSFRD KLESVMLILD KNDVSKSCLT WLRECGGQIV GKVSGKHLIE AIVTGAELGS AEKLIRETMD SKDVLRGSLD 0401: WLKSVFGSEV ELPWNRIREL VLGDDLNLWD EIFEKAFVER MKSIIDSKFE NLTKAVNVAD SVHAYSEITG EKINFQAYLN RPSTGGGVWF IEPNSKKVGL 0501: ISGNKSSPEE SDFQSCLTAY FGPEVSQMRD AVDRRCHSVL EDLLSFFESE KAGPRLKDLA PYVQNKCYDS VSALLADVDK ELEFLCAAVK KENKDSEAIP 0601: PAIIIEKSLF MGRLLFALLN HSKHVPLILG SPRLWCRETM TAVSDKLSSL LRQPRFSSNT PATADSPGKQ LHTDLRKQTS LAVAALLGAE EKTSPKFEEL 0701: NRTMRDLCIK AHTLWIKWLS DELSAILLRD LRSDDGLSAT TPLRGWEETI VKQEQDESQS ELKISLPSLP SLYMISFLCR ASEEIHRIGG HVLDRSILQK 0801: FASSLLEKIT IIYEDFLSAR EASEPQISEK GVLQILLDLR FAADVLSGGD TSTNVETPKS TINRSAYRRR QDQQKTKLVN RGRIDGVTSQ LTQKLDPIDW 0901: LTYEPYLWEN EKQSYLRHAV LFGFFVQLNR MYTDTAQKLS INIESNIMPC STVPRFKYLP ISAPALSSRS TNKVSIPVTS NDASESTLKL GSILTDGQVG 1001: IFKDRSAAAM STFGDILPAQ AAGLLSSFTN TRSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)