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AT5G06240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : embryo defective 2735
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2735 (emb2735); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:830511eggNOG:ENOG410IX8YeggNOG:ENOG4112A5IEMBL:AP002544EMBL:BT002999EMBL:BT004463EMBL:CP002688
EnsemblPlants:AT5G06240EnsemblPlants:AT5G06240.1entrez:830511GeneID:830511Gramene:AT5G06240.1hmmpanther:PTHR36064HOGENOM:HOG000241160
IntAct:Q9FFZ3KEGG:ath:AT5G06240OMA:WHERFLVPhylomeDB:Q9FFZ3Proteomes:UP000006548RefSeq:NP_196242.1STRING:3702.AT5G06240.1
TAIR:AT5G06240tair10-symbols:emb2735UniGene:At.32881UniProt:Q9FFZ3
Coordinates (TAIR10) chr5:+:1888380..1889512
Molecular Weight (calculated) 18530.20 Da
IEP (calculated) 9.63
GRAVY (calculated) -0.75
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLKVVYRKV SDYICYDLKE IVLPSSLPDP PHVVKRRKLT WHERFLVLKE ASRLYAASWV RDIGPELRPN DYKKQGDAEP KKQAKEAENE PSVLEDLAVA
101: ARGGMETLRP ALHRLYMTRA SNYKDALTSF IKGYHEGLQQ VMQNKAESEA PADEADKSKK TT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)