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AT5G05570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: methyltransferase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: vesicle-mediated transport, methylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052), WD40 repeat, subgroup (InterPro:IPR019781), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS6ZeggNOG:KOG1983EMBL:AB005241EMBL:CP002688EnsemblPlants:AT5G05570EnsemblPlants:AT5G05570.1entrez:830440
ExpressionAtlas:Q9FFF8Gene3D:2.130.10.10GeneID:830440GO:GO:0003676GO:GO:0005886GO:GO:0008168GO:GO:0016021
GO:GO:0016192Gramene:AT5G05570.1hmmpanther:PTHR10241hmmpanther:PTHR10241:SF31HOGENOM:HOG000084374InterPro:IPR001388InterPro:IPR001680
InterPro:IPR002052InterPro:IPR015943InterPro:IPR017986OMA:RMENRKWPfam:PF00957Pfscan:PS50892PhylomeDB:Q9FFF8
PROSITE:PS00092PROSITE:PS50892Proteomes:UP000006548RefSeq:NP_196176.1scanprosite:PS00092SMART:SM00320SMR:Q9FFF8
STRING:3702.AT5G05570.1SUPFAM:SSF50978SUPFAM:SSF58038TAIR:AT5G05570UniGene:At.32982UniProt:Q9FFF8
Coordinates (TAIR10) chr5:+:1656766..1663728
Molecular Weight (calculated) 122667.00 Da
IEP (calculated) 5.54
GRAVY (calculated) -0.13
Length 1124 amino acids
Sequence (TAIR10)
(BLAST)
0001: MFVRKFLQKS SGGQNPPPPI APPPRGCLMA EDLDPHIITH SGIPSTASLL AFDPIQCLLA VGTLDGRIKV IGGDNIEAIL ASPKQLPFKN LEFMQNQGFL
0101: VSISNENEIQ VWDLDLRQPA SSLKWESNIT AFAILHGTGY MYVGDEYGMV SVLNYSADEG KLLQLPYYVP TDALSEAAGL SSPIDYPVVG LLSQPCSKGT
0201: RLLIAFSNGL LFLWDASEDH VVLVRGNKDL PVEGKTVADS LEASHDELSN LELDGKEISS LCWASTDGSV LAVGYVDGDI LFWDFSDGQK GKPSNHVVKL
0301: QLSSAEKRLP VIVMHWCLDV SRKSSGGKLF IYGGDIIGSD EVLTMLGLDW SSGMGGLKCV GRADLTLSGS FADMVLSPIA SSRQSGVFLF LLTNPGQLQA
0401: YDDTSLASLM SQKENKISVS PLPYPMVVPT MDPHMTVATF SALNVNDKTS LALSEIVLAA KARTPRTPSG ESAQWPLTGG VPSHVDDYKL ERLYMAGYQD
0501: GSMRIWDATY PCLSLIYILE PKASVIDITG VDASVTAFCF CSKTSCLAVG NECGMVRLYK LVGHTSGGTL EVVTNTEKKG LAIVTTLTLW ICYALSHAVG
0601: SLLVAHHLHQ EDGPQWLAAF SFLSSPVCTL QFVQSTRRLA VGFKCGKVAV LDIGVPSVLF VTNSLSDSGS PIKSLYVKSS SAPTGSKSDP TDHNSINSED
0701: DLLLCAMTKD GQTILLDGNT GKILASCLRP LKNPTAICMH IIENCYENYE TPSEKPAENP SGKDKHENKS HIIKASESHS PDGEQNAVTE TKLIDQIFAN
0801: SLFLMCSEDA LRLYTVKSLS QGSLESIMEV NLPRPCCWMG ILKKDGRECA VLLFYRTGHI EIRSFPNLEV VGESSLLSLL RWNFKPNMEK TVCSDDFGHV
0901: VLVNGCEVAI LSFLAHANGF RLPESLPLLH DKVLAAAADA TFSHISVHKK NHDGAPKFLS NIIKGFRSST EQKMDQVQDF SHLGNIFSNP PYLKPSDTGG
1001: DDEKIVELNI DDIEIDEPVI ILPLTEKDKK EKKDKRTDKE KLFDGASSDA QPKTRTVDEI KSKYRKAGET SAIASQAKDK LHERGEKLER ISQRTAELQD
1101: NAENFASMAH ELAKQMEKRK WWNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)