AT4G25080.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.883 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : magnesium-protoporphyrin IX methyltransferase | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope. | ||||||||||||
| Computational Description (TAIR10) |
magnesium-protoporphyrin IX methyltransferase (CHLM); FUNCTIONS IN: magnesium protoporphyrin IX methyltransferase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium protoporphyrin O-methyltransferase (InterPro:IPR010251), Magnesium-protoporphyrin IX methyltransferase, C-terminal (InterPro:IPR010940); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12877216..12878128 | ||||||||||||
| Molecular Weight (calculated) | 27149.70 Da | ||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||
| Length | 245 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSLTDPERR RKLQAEEVGG GDKEVVREYF NSTGFERWRK IYGETDEVNR VQKDIRLGHA KTVENTMLML TEDRSLAGVT VCDAGCGTGL LSIPLAKEGA 101: IVSASDISAA MVAEAEMKAK AQLPSENLPK FEVNDLESLT GKYDTVVCLD VLIHYPQNKA DGMIAHLASL AEKRVILSFA PKTFYYDILK RIGELFPGPS 201: KATRAYLHSE ADVERALGKV GWKISKRGLT TTQFYFSRLI EAVPM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)