AT4G22860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
7-day old Arabidopsis seedling (no marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cell cycle regulated microtubule associated protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cell cycle regulated microtubule associated protein; CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021); BEST Arabidopsis thaliana protein match is: Cell cycle regulated microtubule associated protein (TAIR:AT4G11990.1); Has 112 Blast hits to 104 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 3; Plants - 89; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11997735..12001281 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58164.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.13 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||||||||||||||||||
| Length | 509 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEMDEDMEIE PMVFEVKEID LEYEFDAARW YDFTREELPE ESQAAEFWFH SAPSYAPSPF VTKLLLREEV YDDKTEASTR SEDEEVVADV CDKYKGTFQQ 101: PNHLATDFNK TGSRMRSGIF SSQQQQGCNL KKVPNQPIWK GPTVSNHKHT DKPKFRAKSS IRPTPRSSTL MRPTASQLAK QNNASKFHMQ VDQSHDKGSC 201: GTSGTEVQAS KRQKLDGGLL RKVADTKQEM SFVHKIPKKD TTLDKNAQHA RTKITIPQEP DFATSQRAHR IRHKNDAKLE QEQPAVYRFK ARPFNRKIFD 301: APSLPIRKKS TPKLPEFQEF HLKTSERAMQ HSSAVTTRSH AYKESDKSII TDMLDGDNRE SRRPSGMDIS KHDVSEGSHV FKARPLNKKI LSSRGDMGIF 401: KNSKRETTVP LEFSFHSEKR VQPDLPTDLF SKLSIKSEIQ PNDGSRTRLF QPKVSKENRI NSFQARNEVT RMAAAKPVSS AGQQMQFGNS GITPETNQQW 501: TARRNLGIR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)