AT4G00830.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:352842..354965 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51880.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.42 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||||||
| Length | 467 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDEVEEEQV EEYEEEEEED DDDDDVGNQN AEEREVEDYG DTKGGDMEDV QEEIAEDDDN HIDIETADDD EKPPSPIDDE DREKYSHLLS LPPHGSEVFI 101: GGLPRDVGEE DLRDLCEEIG EIFEVRLMKD RDSGDSKGYA FVAFKTKDVA QKAIEELHSK EFKGKTIRCS LSETKNRLFI GNIPKNWTED EFRKVIEDVG 201: PGDPTNTTRN RGFAFVLYYN NACADYSRQK MIDSNFKLEG NAPTVTWADP KSSPEHSAAA AQVKALYVKN IPENTSTEQL KELFQRHGEV TKIVTPPGKG 301: GKRDFGFVHY AERSSALKAV KDTERYEVNG QPLEVVLAKP QAERKHDPSS YSYGAAPTPA PFVHPTFGGF AAAPYGAMGA GLGIAGSFSQ PMIYGRGAMP 401: TGMQMVPMLL PDGRVGYVLQ QPGMPMAAAP PQRPRRNDRN NGSSGGSGRD NSHEHDGNRG GRRYRPY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)