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AT4G00755.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 80 Blast hits to 80 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 11; Plants - 57; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
DNASU:828014eggNOG:ENOG410IIEXeggNOG:ENOG4111I2NEMBL:AF013294EMBL:AY084538EMBL:BT003918EMBL:CP002687
EnsemblPlants:AT4G00755EnsemblPlants:AT4G00755.1EnsemblPlants:AT4G00755.2entrez:828014GeneID:828014Genevisible:Q8LG03Gramene:AT4G00755.1
Gramene:AT4G00755.2hmmpanther:PTHR22844hmmpanther:PTHR22844:SF176HOGENOM:HOG000239668InParanoid:Q8LG03InterPro:IPR001810iPTMnet:Q8LG03
KEGG:ath:AT4G00755OMA:HYVRFRLPaxDb:Q8LG03Pfam:PF12937Pfam:Q8LG03PhylomeDB:Q8LG03PIR:T01571
PRIDE:Q8LG03PRO:PR:Q8LG03ProteinModelPortal:Q8LG03Proteomes:UP000006548RefSeq:NP_567185.1RefSeq:NP_849277.1SUPFAM:SSF81383
TAIR:AT4G00755UniGene:At.34513UniProt:Q8LG03
Coordinates (TAIR10) chr4:+:325294..326787
Molecular Weight (calculated) 42776.90 Da
IEP (calculated) 4.70
GRAVY (calculated) -0.56
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFVNNLDTD TSLSILSCLD DPSDIVRASA VSRSWRQFVV KYSLSKNLCL KLFHQLSNVD HIIETSNDRN GESSEAGSSS LMDTRLLEKE HRAFALLARG
101: CMSSPIESCI ADAIRASSTD NYPVESILNT LEKRDRIGRT PSYWSSTGQH KTTVPESLLY KLIGDLCLIT EVSIHPFQAY FQRGHPIYSS HYVRFRLGHE
201: KDNSPHYNNS QDKKGEPGKS SIESNYVWTY TSQEFSMAQE NRLQSFQLPE PVLCIGGYLL VEFLGRVQTQ EMDGQYYICV SHVKVEGRSL AKSFRVENVD
301: DNGKFGLKVL SYNDPKKMEE MDAEAGQDMD AEAGQSQLRN LEQLLNLLHR HPLDVVDYVW PDESDDEYAE SEDEAEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)