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AT4G00250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : DNA-binding storekeeper protein-related transcriptional regulator
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00238.1); Has 626 Blast hits to 580 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 135; Fungi - 97; Plants - 294; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Protein Annotations
EMBL:AF013293EMBL:AF195115EMBL:AL161471EMBL:BT003961EMBL:BT005666EMBL:CP002687EnsemblPlants:AT4G00250
EnsemblPlants:AT4G00250.1entrez:828046GeneID:828046GO:GO:0003677GO:GO:0006355Gramene:AT4G00250.1hmmpanther:PTHR31662
hmmpanther:PTHR31662:SF1HOGENOM:HOG000097067InterPro:IPR007592KEGG:ath:AT4G00250Pfam:PF04504PhylomeDB:O23077PIR:T01546
Proteomes:UP000006548RefSeq:NP_567161.1TAIR:AT4G00250UniGene:At.34582UniProt:O23077
Coordinates (TAIR10) chr4:-:112951..113910
Molecular Weight (calculated) 35515.00 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.72
Length 319 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPLESPATA SSSEVESSSE EIFKSSSEES KPKDPVTVPS SKTLKSPSAA VNSKTDSSDD SEKQSFVLTR RKKKEGAAES PAVKSGKKRA GEGSTSRDMH
101: VKRVKKEDDN KKANPQRVWS EEDEISLLQA VIDFKAETGT SPWDHKNAFF DIAKKSISFD VSHVQFFDKI RRLKNKYFVN RKNKSGESNH DKKCLGLAVL
201: IWGSDGMNVE SPVKKDESIL VKGKANSKEK KVEKPLVIED EQVILGADSE WFEESFLVPV IANLGLDEYS VKKKWSKVSL ETKKKIQEKM KVVDAKKCEL
301: LLAEMDVLKD VTSVLAQTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)