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AT3G56970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the basic helix-loop-helix transcription factor family protein.
Computational
Description (TAIR10)
BHLH038; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Achaete-scute transcription factor related (InterPro:IPR015660), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G56980.1); Has 474 Blast hits to 474 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 14; Plants - 368; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
DNASU:824864eggNOG:ENOG410IY4EeggNOG:ENOG410YP85EMBL:AF488576EMBL:AK221542EMBL:AL138655EMBL:BT026419
EMBL:CP002686EnsemblPlants:AT3G56970EnsemblPlants:AT3G56970.1entrez:824864Gene3D:4.10.280.10GeneID:824864GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0010106GO:GO:0055072Gramene:AT3G56970.1
hmmpanther:PTHR13935hmmpanther:PTHR13935:SF41HOGENOM:HOG000238662InParanoid:Q9M1K1IntAct:Q9M1K1InterPro:IPR011598InterPro:IPR015660
KEGG:ath:AT3G56970ncoils:CoilOMA:INCEELSPANTHER:PTHR13935PaxDb:Q9M1K1Pfam:PF00010Pfam:Q9M1K1
Pfscan:PS50888PhylomeDB:Q9M1K1PIR:T47757PRIDE:Q9M1K1PRO:PR:Q9M1K1PROSITE:PS50888ProteinModelPortal:Q9M1K1
Proteomes:UP000006548RefSeq:NP_191256.1SMART:SM00353SMR:Q9M1K1STRING:3702.AT3G56970.1SUPFAM:SSF47459TAIR:AT3G56970
tair10-symbols:BHLH038tair10-symbols:ORG2UniGene:At.34879UniProt:Q9M1K1
Coordinates (TAIR10) chr3:-:21084204..21085094
Molecular Weight (calculated) 28715.80 Da
IEP (calculated) 5.70
GRAVY (calculated) -0.51
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)