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AT2G41240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix protein 100
Curator
Summary (TAIR10)
Encodes a member of the basic helix-loop-helix transcription factor family protein.
Computational
Description (TAIR10)
basic helix-loop-helix protein 100 (BHLH100); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Achaete-scute transcription factor related (InterPro:IPR015660), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G56970.1); Has 1014 Blast hits to 1014 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 217; Fungi - 10; Plants - 760; Viruses - 12; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioGrid:4060eggNOG:ENOG410IY4EeggNOG:ENOG410YP85EMBL:AC005662
EMBL:AF488626EMBL:AY074635EMBL:CP002685EnsemblPlants:AT2G41240
EnsemblPlants:AT2G41240.1entrez:818723ExpressionAtlas:Q9ZVB5Gene3D:4.10.280.10
GeneID:818723GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009414GO:GO:0010106
GO:GO:0055072hmmpanther:PTHR13935hmmpanther:PTHR13935:SF41HOGENOM:HOG000238662
InParanoid:Q9ZVB5InterPro:IPR011598InterPro:IPR015660KEGG:ath:AT2G41240
ncoils:CoilOMA:CASQLSNPANTHER:PTHR13935PaxDb:Q9ZVB5
Pfam:PF00010Pfam:Q9ZVB5Pfscan:PS50888PhylomeDB:Q9ZVB5
PIR:E84839PRIDE:Q9ZVB5PRO:PR:Q9ZVB5PROSITE:PS50888
ProteinModelPortal:Q9ZVB5Proteomes:UP000006548RefSeq:NP_181657.1RefSeq:NP_850349.1
SMART:SM00353SMR:Q9ZVB5STRING:3702.AT2G41240.1SUPFAM:SSF47459
TAIR:AT2G41240tair10-symbols:BHLH100UniGene:At.37027UniProt:C0SV82
UniProt:Q9ZVB5
Coordinates (TAIR10) chr2:-:17198331..17199320
Molecular Weight (calculated) 27218.10 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.51
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)