AT3G18860.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), PLAA family ubiquitin binding, PFU (InterPro:IPR015155), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), PUL (InterPro:IPR013535); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 46729 Blast hits to 23224 proteins in 745 species: Archae - 52; Bacteria - 6206; Metazoa - 17661; Fungi - 11352; Plants - 5937; Viruses - 0; Other Eukaryotes - 5521 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6501774..6508352 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84305.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 760 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVMDIDFNEY KLRCELHGHD DDVRGICVCN DENIATSSRD RTIRVWSLDP SDKRKYTSEK ILLGHTSFVG PLAWIPPTDE YPEGRLVSGS MDTFVFVWNL 101: MNGENIQTLK GHQMQVTGVA IDNEDIVSSS VDQTLKRWRN GQLVESWDAH QSPIQAVIRL PSGELVSGSS DASLKLWKGK TSLQTLSGHT DTVRGLAVMP 201: DLGFLSASHD GSIRLWALSG EVLLEMVGHT SLVYSVDAHS SGLIVSASED RHAKIWKDGV CVQSLEHPGC IWDAKFLETG DIVTACSDGV VRVWTVRHDA 301: IADQMEIDAY DSQISQYKLS RKKVGGLKLD ELPGLDSLTS PGTSDGQTKV VREGDNGVAY AWNMKEQRWD KIGEVVDGPD GVADRPIHEG VQYDFVFDVD 401: IGDGEPIRKL PYNRSDNPYD AADKWLLKEN LPFAYRQQIV EFILQNSGQK DFNFNPSFRD PFTGANAYVP GQASRTAATP AKPLYKHIPK RGVLVFDAAQ 501: YDGILKKMTE FNTTLRSDAV NNDKSLTELE VSRVGAIVNI LKDTSHYHST NFADMDIALL LKVLQAWPPA MMFPATDIVR MLVLHHHGAS LLIKHVENNN 601: DLLLDLIKKV TEDSALPANL LTTVRVLVNL FKNSSFHYWL QTHHSQILDA FSNCYSSPNK NLQLAYSTLL LNYAVLLIEK KDQEGQAQVL SAALQVPEEE 701: AADVDSKFRS LVAIGSLMLE GLVKKIAIDF DVESIAKSAK ASKEAKIAEV GADIDLVIRQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)