AT3G11540.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.561 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SPINDLY (SPY); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3632842..3637547 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81057.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||
| Length | 732 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF 101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM 201: QYDNALSCYE KAALERPMYA EAYCNMDAGN ITMAIDAYEE CLKIDPDSRN AGQNRLLAMN YINEGLDDKL FEAHRDWGWR FTRLHPQYTS WDNLKDPERP 301: ITIGYISPDF FTHSVSYFIE APLTHHDYTK YKVVVYSAVV KADAKTYRFR DKVLKKGGVW KDIYGIDEKK IASMVREDKI DILVELTGHT ANNKLGTMAC 401: RPAPVQVTWI GYPNTTGLPT VDYRITDSLA DPPDTKQKQV EELVRLPDCF LCYTPSPEAG PVCPTPALSN GFVTFGSFNN LAKITPKVLQ VWARILCAVP 501: NSRLVVKCKP FCCDSIRQRF LTTLEQLGLE SKRVDLLPLI LFNHDHMQAY SLMDISLDTF PYAGTTTTCE SLYMGVPCVT MAGSVHAHNV GVSLLTKVGL 601: GHLVAKNEDE YVQLSVDLAS DVTALSKLRM SLRDLMAGSP VCNGPSFAVG LESAYRNMWK KYCKGEVPSL RRMEMLQKEV HDDPLISKDL GPSRVSVTGE 701: ATPSLKANGS APVPSSLPTQ SPQLSKRMDS TS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)