AT3G08943.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08947.1); Has 1770 Blast hits to 1697 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 578; Plants - 273; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2719198..2721911 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96406.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.37 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 871 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMEITQFLL AAQSADARVR TEAEASLRQF QEQNLPLFLL SLSFELENND KPAESRRLAG ILLKNSLDAK DSATKDHLVK QWFAIDVALK SQIKDRLLRT 101: LGSSALEARH TSAQVIAKVA SIEIPQKQWP ELVGSLLNNM TQQGSPAHLK QSTLETLGYV CEEISHHDLV QDEVNSVLTA VVQGMNQSEN TAEVRLAATK 201: ALLNALDFSQ TNFENEMERN YIMKMVCETA CSKEAEIRQA AFECLVSIAS TYYEVLEHYI QTLFELTSNA VKGDEESVAL QAIEFWSSIC DEEIDRQEYD 301: SPDSGDSSPP HSCFIEKALP HLVQMLLETL LKQEEDQDHD DDVWNISMAG GTCLGLVART VGDGVVPLVM PFVEKNISSP DWRSREAATY AFGSILEGPT 401: IDKLAPMVAA GLEFLLNATK DQNNHVRDTT AWTLSRIFEF LPSPDSGFSV ISPENLPRIV SVLLESIKDV PNVAEKVCGA IYNLAQGYED SGASSSLLSP 501: YLTEIITHLL AAAERTDGAE SKLRGAAYET LNEVVRCSNL SEASSIIAHL LPAIMKKLAE TMDLPIISTD DREKQAELQA SLCGVLQVII QKLSSRDDMK 601: PIIVQNADDI MRLFLRVFGC HSSSVHEEAM LAIGALAYAT GTEFVKYMPE LFKYLQMGLQ NFEEYQVCSI TVGVIGDICR ALDEKILPFC DQIMGLLIQN 701: LQSGALHRSV KPPIFSCFGD IALAIGAHFE RYVAPAVQIM QGAAQVCAQM DTLDEELMDY ANQLRRSIFE AYSGILQGFK DAKAELMMPY AQHLLQFVEL 801: VSKDSLRDES VTKAAVAAMG DLADVVGENT KQLFQNFTFC DEFLNECLES EDEDLKVTAR WTQGMIARLV L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)