AT3G05030.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.845 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sodium hydrogen exchanger 2 | ||||||||||||
| Curator Summary (TAIR10) |
member of Sodium proton exchanger family | ||||||||||||
| Computational Description (TAIR10) |
sodium hydrogen exchanger 2 (NHX2); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 1 (TAIR:AT5G27150.1); Has 5239 Blast hits to 5232 proteins in 1555 species: Archae - 25; Bacteria - 3481; Metazoa - 811; Fungi - 131; Plants - 434; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1393456..1395753 | ||||||||||||
| Molecular Weight (calculated) | 46921.20 Da | ||||||||||||
| IEP (calculated) | 7.44 | ||||||||||||
| GRAVY (calculated) | 0.30 | ||||||||||||
| Length | 421 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFETGAIQFF KKLDIGTFDL GDFLAIGAIF AATDSVCTLQ VLNQDETPLL YSLVFGEGVV NDATSVVLFN AIQSFDLTHL NHEAAFQFLG NFFYLFLLST 101: GLGVATGLIS AYVIKKLYFG RHSTDREVAL MMLMAYLSYM LAELFALSGI LTVFFCGIVM SHYTWHNVTE SSRITTKHAF ATLSFLAETF IFLYVGMDAL 201: DIEKWRFVSD SPGTSVAVSS ILMGLVMLGR AAFVFPLSFL SNLAKKHQSE KISIKQQVVI WWAGLMRGAV SMALAYNKFT RSGHTELRGN AIMITSTITV 301: CLFSTMVFGM LTKPLIRYLM PHQKATTSTT SMLSDDSTPK SIHIPLLDGE QLDSFELPGS HQDVPRPNSL RGFLMRPTRT VHYYWRQFDD AFMRPVFGGR 401: GFVPFVPGSP TERSSHDLSK P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)