AT2G43160.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ENTH/VHS family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ENTH/VHS family protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G59290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17948884..17952920 | ||||||||
| Molecular Weight (calculated) | 69530.00 Da | ||||||||
| IEP (calculated) | 4.92 | ||||||||
| GRAVY (calculated) | -0.85 | ||||||||
| Length | 646 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKVFGQTVR DLKREVNKKV LKVPGVEQKV LDATSNEPWG PHGSLLADLA QASRNYHEYQ LIMVVIWKRL SDTGKNWRHV YKALTVLEYM VGHGSERVID 101: EIRERAYQIS TLSDFQYIDS GGRDQGSNVR KKSQSLVALV NDKERIAEVR QKAAANRDKY RSSAPGGMYK PSGGYGDKYD YGSRDEERSS YGREREYGYR 201: DDDRNSRDGD RHSRDSEDRY GRDGNRDDDY RGRSRSVDNY GSRGRSSERE REDDGHSSSR GSGARADDNS QDGRGGLQRK FSEQNIGAPP SYEEAVSDSR 301: SPVYSERDGG ETPQVTAPGA ASPPPPQVAA PEAASPPTGT NTANTTATFV NESPSQKVET FDEFDPRSAF SAGPPAYAST DGVTAPPTVT SMSAPTTSNS 401: VEMDLLGSLA DVFSSNALAI VPADSIYVET NGQANAGPAP SFSTSQPSTQ SFDDPFGDSP FKAFTSTDTD STPQQNFGAS FQPPPPAFTS EVSHPDTAHN 501: FGFGDSFSAV ANPDPASQNV QPPSNSPGFP QEQFATSQSG IDILAGILPP SGPPVQSGPS IPTSQFPPSG NNMYEGFHSQ PPVSTAPNLP GQTPFGQAVQ 601: PYNMVPHSQN MTGAMPFNSG GFMHQPGSQT PYSTPSGPAG QFMALA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)