AT2G41700.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ATP-binding cassette A1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ATP-binding cassette A1 (ABCA1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP-binding cassette A2 (TAIR:AT3G47730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17383239..17395932 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 205160.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1846 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MQFLFLKFRI VDQILLLSLI HWQILLPTIV MLLLIAVRTR VDTTIHPAHS NIDKDTVVEV GKGNSPSFPE VLKLLLAEGD FLAFAPDTDE TNNMIDILSL 0101: KFPELRLVTK IFKDDIELET YITSAHYGVC SEVRNCSNPK IKGAVVFHEQ GPHLFDYSIR LNHTWAFAGF PNVKSIMDTN GPYINDLEMG INTIPTMQYS 0201: FSGFLTLQQV VDSFIIFASQ QNNDLPLSHS NLSSALRFEL PWTLFSPSVI RMVPFPTREY TDDEFQSIVK SVMGLFLFKY SDKTLVFTYF FLFGLSAIML 0301: SFMISTFFTR AKTAVAVGTL TFLGAFFPYY TVNDESVSMV LKVVASLLSP TAFALGSINF ADYERAHVGL RWSNIWRASS GVSFFVCLLM MLLDSILYCA 0401: LGLYLDKVLP RENGVRYPWN FIFSKYFGRK KNNLQNRIPG FETDMFPADI EVNQGEPFDP VFESISLEMR QQELDGRCIQ VRNLHKVYAS RRGNCCAVNS 0501: LQLTLYENQI LSLLGHNGAG KSTTISMLVG LLPPTSGDAL ILGNSIITNM DEIRKELGVC PQHDILFPEL TVREHLEMFA VLKGVEEGSL KSTVVDMAEE 0601: VGLSDKINTL VRALSGGMKR KLSLGIALIG NSKVIILDEP TSGMDPYSMR LTWQLIKKIK KGRIILLTTH SMDEAEELGD RIGIMANGSL KCCGSSIFLK 0701: HHYGVGYTLT LVKTSPTVSV AAHIVHRHIP SATCVSEVGN EISFKLPLAS LPCFENMFRE IESCMKNSDS DYPGIQSYGI SVTTLEEVFL RVAGCNLDIE 0801: DKQEDIFVSP DTKSSLVCIG SNQKSSMQPK LLASCNDGAG VIITSVAKAF RLIVAAVWTL IGFISIQCCG CSIISRSMFW RHCKALFIKR ARSACRDRKT 0901: VAFQFIIPAV FLLFGLLFLQ LKPHPDQKSI TLTTAYFNPL LSGKGGGGPI PFDLSVPIAK EVAQYIEGGW IQPLRNTSYK FPNPKEALAD AIDAAGPTLG 1001: PTLLSMSEFL MSSFDQSYQS SREGLSSHDS CNHPDGSLGY TVLHNGTCQH AGPIYINVMH AAILRLATGN KNMTIQTRNH PLPPTKTQRI QRHDLDAFSA 1101: AIIVNIAFSF IPASFAVPIV KEREVKAKHQ QLISGVSVLS YWLSTYVWDF ISFLFPSTFA IILFYAFGLE QFIGIGRFLP TVLMLLEYGL AIASSTYCLT 1201: FFFTEHSMAQ ATSSYSVLLP ISLFVFSFSS NVILMVHFFS GLILMVISFV MGLIPATASA NSYLKELILF RYALQNFFRL SPGFCFSDGL ASLALLRQGM 1301: KDKSSHGVFE WNVTGASICY LGLEVRLEYC RYSMLLLSFF HGIDTKLSLI YTIGASRLTE LIYDRVYSTS FSTEPLLKDS TGAISTDMED DIDVQEERDR 1401: VISGLSDNTM LYLQNLRKVY PGDKHHGPKV AVQSLTFSVQ AGECFGFLGT NGAGKTTTLS MLSGEETPTS GTAFIFGKDI VASPKAIRQH IGYCPQFDAL 1501: FEYLTVKEHL ELYARIKGVV DHRIDNVVTE KLVEFDLLKH SHKPSFTLSG GNKRKLSVAI AMIGDPPIVI LDEPSTGMDP VAKRFMWDVI SRLSTRSGKT 1601: AVILTTHSMN EAQALCTRIG IMVGGRLRCI GSPQHLKTRY GNHLELEVPF YNGVKPNEVS NVELENFCQI IQQWLFNVPT QPRSLLGDLE VCIGVSDSIT 1701: PDTASASEIS LSPEMVQRIA KFLGNEQRVS TLVPPLPEED VRFDDQLSEQ LFRDGGIPLP IFAEWWLTKE KFSALDSFIQ SSFPGATFKS CNGLSIKYQL 1801: PFGEGGLSLA DAFGHLERNR NRLGIAEYSI SQSTLETIFN HFAANS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)