AT2G41520.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Heat shock protein DnaJ with tetratricopeptide repeat | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT5G12430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17317662..17322705 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119263.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1077 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSPAAVEIGS PVEKVSSVLN PMENFSAFFP ESVHSHDQRT MGSSFSFGFG AGSGQTTKTR HKPRLVKLRK NGREVKKPSF SGEILSGFNP FAPPGKGSLH 0101: MNSGNDRDAG QSPGDKCFVF GASGNSSGAK SSPGNATIAS LSDEEEFSTP IGDSELDSES IKEHSNGVRG KVDNDRENIR PCSESTIFDA TNGFRFDGGV 0201: NGSWKSVENP DAVKEFFRRQ NGMDKASASK SCSKSNSVQY AHGKNRDDPE LNLLADMEKL NISDSRVHGG SDYEEASKSN KTPVFTFSSF GKVDPICKEG 0301: AATSEPYSFS SNGFQQSNNA SGENPTFHSQ TTYGNNLTNT SFATKTFFDD FKVPEWDPSL LKDSLFPEVD RNPVHARSNR SSKDKRSKKV KEKMKQGEPD 0401: RCNGQTAEGI EAQEKLNSPG YCSPMDYSPY QGDKTSNQFP TETPLAPSHS REHIDSRSSN DFKVASARDS SLFTAEDHGS TCIPNFSFSA STSQETIRHK 0501: KLQAVKKYRR KVNNSLPKSN LNATMRNNQE NQPVNTGQAK QDSGSTSMMP DVCEVWRLRG NQAYKNGYMS KAEECYTHGI NSSPSKDNSE YSVKPLALCY 0601: GNRAAARISL GRLREAISDC EMAASLDPSY IKAYMRAANC HLVLGELGSA VQYFNKCMKS TSSVCLDRRT TIEAAEGLQQ AQRVADFTSC ASIFLEKRTP 0701: DGASDALVPI ANALSISSCS DKLLQMKAEA LFMIRRYKEV IELCENTLQT AERNFVSAGI GGTTNVNGLG STYHSLIVWR WNKISKSHFY LGNLEKALDI 0801: LEKLQQVEYT CNENQEECRE SPASLVATIS ELLRYKNAAI CFCNRAAANQ ALVQIADAIA DCSLAMALDE NYTKAVSRRA TLHEMIRDYD QAASDLQRLI 0901: SILVKQSDKT KTPETSVDRA SSRKELKQAR QRLSVMEEKS KEGIHLDFFL IMGVKTSDSA ADIKKAYRKA ALRHHPDKAA QILVRSESEG PWLKEILEEV 1001: HKGADRLFKM IGEAYSVLSD PTKRSDYELE EEIRKARASR ESYRSRKAAE ASSPPYQTSR RYWKDSWRTN QNTPSWW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)