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AT2G40610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A8
Curator
Summary (TAIR10)
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational
Description (TAIR10)
expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG2HeggNOG:ENOG410YCRVEMBL:AK228685EnsemblPlants:AT2G40610EnsemblPlants:AT2G40610.1entrez:818656ExpressionAtlas:Q0WQK9
Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:818656GO:GO:0005576GO:GO:0005618GO:GO:0009664GO:GO:0016020
Gramene:AT2G40610.1InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT2G40610
OMA:DDPKWCLPaxDb:Q0WQK9Pfam:O22874Pfam:PF01357Pfam:PF03330Pfscan:PS50842Pfscan:PS50843
PhylomeDB:Q0WQK9PRIDE:Q0WQK9PRINTS:PR01225PRINTS:PR01226PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q0WQK9
Proteomes:UP000006548RefSeq:NP_181593.1SMART:SM00837SMR:Q0WQK9STRING:3702.AT2G40610.1SUPFAM:SSF49590SUPFAM:SSF50685
TAIR:AT2G40610tair10-symbols:ATEXP8tair10-symbols:ATEXPA8tair10-symbols:ATHEXP ALPHA 1.11tair10-symbols:EXP8tair10-symbols:EXPA8UniGene:At.42931
UniGene:At.70279UniProt:O22874UniProt:Q0WQK9
Coordinates (TAIR10) chr2:-:16949121..16950472
Molecular Weight (calculated) 27261.80 Da
IEP (calculated) 6.98
GRAVY (calculated) -0.28
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MYTPSYLKYS IISIISVLFL QGTHGDDGGW QGGHATFYGG EDASGTMGGA CGYGNLYGQG YGTNTAALST ALFNNGLTCG ACYEMKCNDD PRWCLGSTIT
101: VTATNFCPPN PGLSNDNGGW CNPPLQHFDL AEPAFLQIAQ YRAGIVPVSF RRVPCMKKGG IRFTINGHSY FNLVLISNVG GAGDVHAVSI KGSKTQSWQA
201: MSRNWGQNWQ SNSYMNDQSL SFQVTTSDGR TLVSNDVAPS NWQFGQTYQG GQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)