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AT2G32390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.776
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate receptor 3.5
Curator
Summary (TAIR10)
Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
glutamate receptor 3.5 (GLR3.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3 (InterPro:IPR000337), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.4 (TAIR:AT1G05200.2); Has 5516 Blast hits to 5369 proteins in 333 species: Archae - 14; Bacteria - 348; Metazoa - 4290; Fungi - 0; Plants - 640; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT2G32390EnsemblPlants:AT2G32390.1entrez:817800hmmpanther:PTHR18966hmmpanther:PTHR18966:SF190Pfam:PF00060Pfam:PF00497
Pfam:PF01094SUPFAM:SSF53850tair10-symbols:ATGLR3.5tair10-symbols:GLR3.5tair10-symbols:GLR6TMHMM:TMhelix
Coordinates (TAIR10) chr2:-:13748468..13751757
Molecular Weight (calculated) 100938.00 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.12
Length 895 amino acids
Sequence (TAIR10)
(BLAST)
001: MILSLEERPN LRLWRPLKTL MLTRVSSGAP SLILSSRTLI AVDLLAPWEL MENKVVAAIG PQSSGIGHII SHVANELHVP FLSFAATDPT LSSLQYPYFL
101: RTTQNDYFQM NAITDFVSYF RWREVVAIFV DDEYGRNGIS VLGDALAKKR AKISYKAAFP PGADNSSISD LLASVNLMES RIFVVHVNPD SGLNIFSVAK
201: SLGMMGSGYV WITTDWLLTA LDSMEPLDPR ALDLLQGVVA FRHYTPESDN KRQFKGRWKN LRFKESLKSD DGFNSYALYA YDSVWLVARA LDVFFSQGNT
301: VTFSNDPSLR NTNDSGIKLS KLHIFNEGER FLQVILEMNY TGLTGQIEFN SEKNRINPAY DILNIKSTGP LRVGYWSNHT GFSVAPPETL YSKPSNTSAK
401: DQRLNEIIWP GEVIKPPRGW VFPENGKPLK IGVPNRVSYK NYASKDKNPL GVKGFCIDIF EAAIQLLPYP VPRTYILYGD GKKNPSYDNL ISEVAANIFD
501: VAVGDVTIIT NRTKFVDFTQ PFIESGLVVV APVKGAKSSP WSFLKPFTIE MWAVTGALFL FVGAVIWILE HRFNEEFRGP PRRQIITVFW FSFSTMFFSH
601: RENTVSTLGR FVLLVWLFVV LIINSSYTAS LTSILTVQQL TSRIEGMDTL IASNEPIGVQ DGTFAWKFLV NELNIAPSRI IPLKDEEEYL SALQRGPRGG
701: GVAAIVDELP YIKALLSNSN CKFRTVGQEF TRTGWGFAFQ RDSPLAVDMS TAILQLAEEG KLEKIRKKWL TYDHECTMQI SDTENYQISV QSFWGLFLIC
801: GVVWFIALTL FCWKVFWQYQ RLRPEESDEV QARSEEAGSS RGKSLRAVSF KDLIKVVDKR EAEIKEMLKE KSSKKLKDGQ SSAENSQSKD HETPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)