AT2G30600.5
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.470 plasma membrane 0.338 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BTB/POZ domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BTB/POZ domain-containing protein; INVOLVED IN: cell adhesion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coagulation factor 5/8 type, C-terminal (InterPro:IPR000421), Farnesoic acid 0-methyl transferase (InterPro:IPR022041), BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G21780.2). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:13037410..13041475 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97700.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.54 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 855 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAAKENKFL TVAPFECAWS DDLKFREAGR GCVAFDAFAH NDVTVVFREN VGTQHYHYKK DNSPHYIVII GSNRNRRLKI QVDGKSVVDE EASDLCRCSL 101: EFQSYWISIY DGLISIGKGR YPFQNLVFKW QDPKPNCNVQ YVGLSSWDKH VGYRNVSVFP VTHNHILLWK QVDCREVRGD ESGDEKVVEE GTGYDYEQWG 201: LGNFLESWQL SDTVFLVGEE EMDVPAHKVI LQASGNFPLR SSDGDVIQLR GVSYPILHAL LQYIYTGRTQ ILESELAPLR DLSSKFEVMS LVRQCEESID 301: HFKLSKTAFD SCRKVKLLCP ISHPLSGFMF PSAFPVDVGK LVKLYSTGEY SDIKIYLSDH SLTFQSHKVI LSLWSVAFAK MFTNGMSESH SSTIYLTDVS 401: PEAFKAMMNF MYSGELNMED TVNFGTELIH LLFLADRFGV VPLHQECCKM LLECLSEWVA VSSLLKLKEK RNEIPHSNYR VKRILILCHV YITCRDGVPF 501: WKKDSVCSVL QVVSSISSCK LIEEMCKRKF SMHFDYCTTA SLDFVLLDQT TFSDILESAD LTVTSEEKIL NAVLMWCMKA EESHSWGVID EMMNYADPKS 601: LFKERLQSLD DLLPHVRFSL LPYELLKRLE NSNLSKEIPV FNRLLKEAAS FLTSGLISPG NEPISRFQHR RSSFKELQYI RDGDSNGVLH FVGTSYGSHQ 701: WVNPVLAKKI NITSSSPTSR FTDPKALASK AYAGTSFAGP RMEDGHISSW WVVDLGEEHQ LMCNYYTFRQ DGSRAFTRFW KFQGSMDGKT WTDLRVHEDD 801: QTMCKAGQFA SWPITAANAL LPFRFFRLVL TGPTADTSTP WNFCICYLEL YGYFR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)