AT2G05120.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.875 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleoporin, Nup133/Nup155-like | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleoporin, Nup133/Nup155-like; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1842069..1846858 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 137056.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1220 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFSPLTKRAK QSSRNEKTPR NRVPPPDSPV TPATQNRNNF ISDRPATGTP APWAPRLSVL ARVSPGNNGD KGVDSDQLKP VFVGEFPQLL RDEQSYPGDA 0101: CVSGGMDKET CLSWFITGSK VFVWSHLTTL PSRKCVVLEL PVVVLVNEES GSGLQDGKSW LVNVVSWDTS AGAATRASRS RSPVGVVMCN RKTRAVAEKA 0201: RHLIKRQSNG IRSSRAENSD LNSLITTAVA AAERLCIAIA CSSNGELWQF TCSPTGVKSN QVQLNISSSS VSEGYPRSLI WRFSQGLARE SCWEFLMLTD 0301: CDIHCFTIEP YPDLTVSEVW QHEIVGTDGD SGIKKDIASQ KQIWPLDLQV DDQGKVITVL VATICMDRAS SSSYTQYSLL TLQHKSEMRF ADGREEKVLE 0401: KQGPIQVIIP KARVEDKDFL FSMRLRVGGR PPGSAIILSG DGTATVCYCH GSSTRLYKFD LPYDAGKVLD ASVLSSTDEH EYGAWTVLTE KAGVWAIPEK 0501: AVVLGGVEPP ERSLSRKNSS NERSTRDETR VTPYGVDRTA GRENSDIQNI EDKGNPKMGF TRQTARDEES EALLGQLFEG FLLSGKVDGS LEKLSQSGAF 0601: DRDGEANVFA RKSKSIVDTL AKHWTTTRGA EIVAMTVISS QLVEKQQKHE NFLHFLALSK CHEELCSKQR HSLQIILENG EKLAAMIQLR ELQNMINQNR 0701: SARFGSPQAG SEDQVSCALW DLIQFVGERA RRNTVLLMDR DNAEVFYSKV SELEEVFYCL NRQLEYIIRA DQPLGTQLQR ACELSNACVT ILQTALDYKN 0801: EHQMWYPPLE GLIPWHSQTV VCNGLWCIAS FMLHLLTEAS RIDISAKSDI YTHLEVLTEV LLEACAGSTF AKLEREEENK GLLNEYWTRR DTIFDSLYRQ 0901: AKEFMEAEIQ HEGVGPQGGF SYFVFQQLYD MKQFSKLLRL GEEFQDELLI FLKRHSDLVW LHQVFLHQFS SASDTLHTLA LSQDEESMTT VEERTGPEPE 1001: DVQPTFADRK RFLNLSKIAY VADKDADSES KVKRIEADLN LLKLQEEITK ALPNGEARNR LFRPEELIET CLNIQGRWTA IKAFEVFAWT SSSFRENHRS 1101: LLEECWRNAA DQDDWDRHHQ ASTNEGWSEE ETLQNLRNTA LFQASKRCYG PTRVNTFDGD FAQVLPLRRE NPEDSTSSVE DVLMSHKDFA EAGKLMLTAI 1201: MLGCVEEEGI VAEEFSSPME |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)