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AT1G80750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L30/L7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1152 Blast hits to 1152 proteins in 343 species: Archae - 126; Bacteria - 0; Metazoa - 424; Fungi - 213; Plants - 191; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1841eggNOG:KOG3184EMBL:AC011713EMBL:BT003066EMBL:CP002684EnsemblPlants:AT1G80750EnsemblPlants:AT1G80750.1
entrez:844414ExpressionAtlas:Q9SAI5Gene3D:3.30.1390.20GeneID:844414Genevisible:Q9SAI5GO:GO:0005730GO:GO:0005829
GO:GO:0022625Gramene:AT1G80750.1hmmpanther:PTHR11524hmmpanther:PTHR11524:SF11HOGENOM:HOG000170917InParanoid:Q9SAI5InterPro:IPR005998
InterPro:IPR012988InterPro:IPR016082KEGG:ath:AT1G80750KO:K02937OMA:PYKDGGDPaxDb:Q9SAI5Pfam:PF00327
Pfam:PF08079Pfam:Q9SAI5PhylomeDB:Q9SAI5PIR:A96840PRIDE:Q9SAI5PRO:PR:Q9SAI5ProteinModelPortal:Q9SAI5
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_178190.1SMR:Q9SAI5STRING:3702.AT1G80750.1SUPFAM:SSF55129TAIR:AT1G80750TIGRfam:TIGR01310TIGRFAMs:TIGR01310
UniGene:At.33879UniGene:At.62180UniProt:Q0WU42UniProt:Q9SAI5
Coordinates (TAIR10) chr1:+:30349052..30350434
Molecular Weight (calculated) 28345.80 Da
IEP (calculated) 10.43
GRAVY (calculated) -0.63
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)