AT1G75230.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA glycosylase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G19480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28234444..28235628 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43393.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEHSPSQPS SHTLPPNQPE SPNHETPNPI PPETNDDDSA SSAGVSGSIV SSTTIEAPQV TELGNVSSPP TKIPLRPRKI RKLSPDDDAS DGFNPEHNLS 101: QMTTTKPATK SKLSQSRTVT VPRIQARSLT CEGELEAALH HLRSVDPLLA SLIDIHPPPT FETFQTPFLA LIRSILYQQL AAKAGNSIYT RFVALCGGEN 201: GVVPENVLPL TPQQLRQIGV SGRKASYLHD LARKYQNGIL SDSGIVNMDE KSLFTMLTMV NGIGSWSVHM FMINSLHRPD VLPVNDLGVR KGVQMLNGME 301: DLPRPSKMEQ LCEKWRPYRS VASWYLWRLI ESKNTPPNAA AATAGAALSF PQLEDIQQQE QEQQHQQHQQ QQPQLMDPLN NVFSIGYSQL HCAT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)