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AT1G72340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NagB/RpiA/CoA transferase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 2B (eIF-2B) family protein (TAIR:AT1G53900.1); Has 4473 Blast hits to 4473 proteins in 1031 species: Archae - 373; Bacteria - 1735; Metazoa - 520; Fungi - 473; Plants - 219; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1184eggNOG:KOG1466EMBL:AY062581EMBL:AY086207EMBL:BT000134EMBL:CP002684EnsemblPlants:AT1G72340
EnsemblPlants:AT1G72340.1entrez:843566GeneID:843566GO:GO:0003743Gramene:AT1G72340.1hmmpanther:PTHR10233hmmpanther:PTHR10233:SF18
HOGENOM:HOG000175731InterPro:IPR000649KEGG:00270+5.3.1.23KEGG:ath:AT1G72340KO:K03239ncoils:CoilOMA:SPPMADT
Pfam:PF01008PhylomeDB:Q8W4G0Proteomes:UP000006548Reactome:R-ATH-72731RefSeq:NP_565041.1SMR:Q8W4G0STRING:3702.AT1G72340.1
SUPFAM:SSF100950TAIR:AT1G72340UniGene:At.18244unipathway:UPA00904UniProt:Q8W4G0
Coordinates (TAIR10) chr1:+:27236898..27238482
Molecular Weight (calculated) 42193.60 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.05
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRRSPSFIL DERRSSNSPP MADTTRGPFQ NPDSISAYYQ TRAAHHGVIT SDWLAQAQAA VGGVSGDAQH DLSVTDLGNE KSFNVIEEFN NWRKQPDLAE
101: AVAAIRALAA VIRASEASTM MELEIELKKA SDTLKSWDKT SISLTAGCDL FIRYVTRTSA LEYEDFNSAK SRLLERAEKF GEISCKARRI IAMLSQDFIF
201: DGCTILVHGL SRVVLEILKT AAQNNKLFRV LCTEGRPDGT GVLLSSELSK LDIPVKLLLD SAVAYSMDEV DMVFVGADGV VESGGIINMM GTYQIALVAH
301: SMNKPVYVAA ESYKFARLYP LDQKDMAPAL RPIEFGVKIP TKVEVERSAR DYTPPQYLTL LFTDLGVLSP SVVSDELIQL YL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)