AT1G56230.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1399) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21046111..21048959 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 84827.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||
| Length | 742 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLERSEFVD GVAARSLSEI SEVDAVRIGG DIISSARRLI ALLRSVGDCQ WLHHPPVIAE AIRRYDELWM PLISDLTVGL KPPMILPPLD VEWVWFCHCL 101: NPVSYSDYCE RRFSKLIGKP AIYDEENEDY AVLQCEKIWS LRYPLESFEN RADPDSLETV SLVNEDIKSL VKKQMFLWEK FSAPYMSETV YLIAARLRYK 201: GFLLILHKFK DEVSSLIPAS DILLMWLTHQ SYPTVYKDDV DEMLEEMTRK VVQVGEKVEK TEVETTKELW DRYFNQPYEK AGGELSIIAN ESGLSNNTMF 301: YWPVSDMDVN TAYKSIRPRF VLEAEQNESI DRSFLRLRVA RCHRKLQLDK KMTDLSSEAS WQKAWHLYCE FGTLGFILES HCDRSRGICF KSGKPEGMIE 401: FPWNDLLRAH SLASGRFLGK QVSVFASVTP PVQAPYLLRF VPDRVTDDSG AMISDSVQRT NNFRPQEGRW LTRTVLDHAG RECFVIRIRV GKGVFKRGGE 501: VPSPVKSEER ITEVRVGSWS YVEGSIGKAP AKVVGTVTPK EPMEDWEAAW EFSTGDELCI RWDSLGTISE LRLYSRNPGS LVRLLTGRRM QYKGEDEEDD 601: EGFVTVVRST EEDPTEKATA LIDWKHQAVE FLPEEDAVFV LLLSVSILRS VTHKRREDVG KLLVRKRITE ATGERDWGSV IVDASSTNVS SSSSPYVEPW 701: YRNSGKVMAM EEKAQVARYP YPVMSYSNVD GGDNLYKHVI FG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)