AT1G32810.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G10600.1); Has 8965 Blast hits to 5782 proteins in 447 species: Archae - 8; Bacteria - 670; Metazoa - 4118; Fungi - 1126; Plants - 398; Viruses - 78; Other Eukaryotes - 2567 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:11881810..11885843 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117555.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.92 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.08 | ||||||||||||||||||||||||||||||||
| Length | 1068 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKGRSYRFSS TDPHEDWVDG LWTVDCVCGV NDDDGTEMVK CDDCGVWVHT RCSRFVEGQE LFTCHKCKSK NNVNDSEETE VAQLLVELPT KTLGMENSCT 0101: RSVPFKRPFR LWTEIPAEEK VHVQGIPGGD PSLFDGLSSV FSRELWKCSG YVPKKFNLKY REFPCWDEQE KDEDGAGVLF SMSKENVIAA PVSTLVGMRR 0201: SLDGKGGTND VKLGCDSGET DRKHSQGAIK KDKRLLRPMM TNKRRKELFG ASKERMKKKV EVVDKEEDDK KGFVGKTGNR PASDAKPSES RKDIEAEGFT 0301: SDVGITKSVK AKKAALETGG DESGNTEIGV ECSREQNLSD VHANGTGKQE EKAGHHFRIV LKSSATTDPS VLGGRDVPHN EANKEEERQG TIADAPEDNA 0401: ADSSESSQKP SLGSMVGKTR EGEEKNCDDV SRKISTRKNK FQKETADTGA SGALGLQTLD HMDSKVSGSS ASQISGGSEL NKMTPSSSLP DDHKPQSVEM 0501: VSEGISSGNR DRAIELKREL VVSETEKDIQ ETKPGSVLFQ EPSKPCRPIP HTVSGNGRPK MVVCIGKTSS SSATEKSPKP STSRNSIPGL KQQPGDDDND 0601: ANTNDEDCVS SDVIRERDGD DEPSEKAPKH PKFSITSKKS MQHNRTSHSS VSKTRESSSS SKTSSATRIN GGSSEAPSKH SLSGTFPKNE KPGQSIFQSS 0701: TKNPVQSIIS LAPNLSDEEL ALRLHHQLNS SPRVPRVPRM RQPGSLPLSP TAPSFKRTSS SGSKDHTTFS RRKNKDTSKE GYCNLRDDDR CSTRSAKNRR 0801: SPDRRTQQDS GSRGGSLCSK GEENETTKTS SYSSRKVLLP PNSTTSTSSG PCSSSELNEH NKPSPHSSPR NNGTPVHRTL PGLINEIMNK GKRMAYEELC 0901: NAVLPHWPHL RKHNGERYAY SSHSQAVLDC LRNRHEWARL VDRGPKTNSG KKKRKLDAAE EDSDENESSK GGRKRLHQHH SQGEEFPKGK RKARKRRRLS 1001: IQRKGIKVLR KKRNEEEVSE EDEEDAFSDT SEESIFCDEE EEEEEEGHTA TGTGQVSASS SEEAQATS |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)