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AT1G26770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A10
Curator
Summary (TAIR10)
Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational
Description (TAIR10)
expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG2HeggNOG:ENOG410YCRVEMBL:AC006535EMBL:AF229431EMBL:AF229437EMBL:AY052247EMBL:AY060512
EMBL:CP002684EnsemblPlants:AT1G26770EnsemblPlants:AT1G26770.1entrez:839218ExpressionAtlas:Q9LDR9Gene3D:2.40.40.10Gene3D:2.60.40.760
GeneID:839218Genevisible:Q9LDR9GO:GO:0005576GO:GO:0005618GO:GO:0009664GO:GO:0016020hmmpanther:PTHR31867
hmmpanther:PTHR31867:SF22HOGENOM:HOG000220793InParanoid:Q9LDR9InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118
InterPro:IPR009009PaxDb:Q9LDR9Pfam:PF01357Pfam:PF03330Pfam:Q9LDR9Pfscan:PS50842Pfscan:PS50843
PhylomeDB:Q9LDR9PRIDE:Q9LDR9PRINTS:PR01225PRINTS:PR01226PRO:PR:Q9LDR9PROSITE:PS50842PROSITE:PS50843
ProteinModelPortal:Q9LDR9Proteomes:UP000006548RefSeq:NP_173999.1SMART:SM00837SMR:Q9LDR9STRING:3702.AT1G26770.2SUPFAM:SSF49590
SUPFAM:SSF50685TAIR:AT1G26770tair10-symbols:AT-EXP10tair10-symbols:ATEXP10tair10-symbols:ATEXPA10tair10-symbols:ATHEXP ALPHA 1.1tair10-symbols:EXP10
tair10-symbols:EXPA10TMHMM:TMhelixUniGene:At.19919UniProt:Q9LDR9
Coordinates (TAIR10) chr1:+:9259805..9260792
Molecular Weight (calculated) 26429.20 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.06
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MGHLGFLVMI MVGVMASSVS GYGGGWINAH ATFYGGGDAS GTMGGACGYG NLYSQGYGTS TAALSTALFN NGLSCGSCFE IRCENDGKWC LPGSIVVTAT
101: NFCPPNNALA NNNGGWCNPP LEHFDLAQPV FQRIAQYRAG IVPVSYRRVP CRRRGGIRFT INGHSYFNLV LITNVGGAGD VHSAAIKGSR TVWQAMSRNW
201: GQNWQSNSYL NGQALSFKVT TSDGRTVVSF NAAPAGWSYG QTFAGGQFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)