AT1G22280.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.781 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phytochrome-associated protein phosphatase type 2C | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C). PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB. Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
phytochrome-associated protein phosphatase type 2C (PAPP2C); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G34750.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7874236..7875496 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31436.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.79 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||
| Length | 287 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKFCCFTSA SEVVGGQSSS RSGKGRSDEG MIKYGFSLVK GKANHPMEDY HVANFINIQD HELGLFAIYD GHMGDSVPAY LQKRLFSNIL KEVKTKKKGE 101: FWVDPRRSIA KAYEKTDQAI LSNSSDLGRG GSTAVTAILI NGRKLWIANV GDSRAVLSHG GAITQMSTDH EPRTERSSIE DRGGFVSNLP GDVPRVNGQL 201: AVSRAFGDKG LKTHLSSEPD IKEATVDSQT DVLLLASDGI WKVMTNEEAM EIARRVKDPQ KAAKELTAEA LRRESKDDIS CVVVRFR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)