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AT1G20050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.935
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C-8,7 sterol isomerase
Curator
Summary (TAIR10)
C-8 sterol isomerase
Computational
Description (TAIR10)
HYDRA1 (HYD1); FUNCTIONS IN: C-8 sterol isomerase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Emopamil-binding (InterPro:IPR007905); Has 377 Blast hits to 377 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 175; Plants - 59; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41101ESeggNOG:KOG4826EMBL:AK228406EnsemblPlants:AT1G20050EnsemblPlants:AT1G20050.1entrez:838593ExpressionAtlas:Q0WRA8
GeneID:838593GO:GO:0016021GO:GO:0016125GO:GO:0047750Gramene:AT1G20050.1gramene_pathway:5.3.3.5gramene_pathway:PWY-2541
gramene_pathway:PWY-6663gramene_plant_reactome:1119286gramene_plant_reactome:1119370gramene_plant_reactome:1119439gramene_plant_reactome:6874289gramene_plant_reactome:6874920gramene_plant_reactome:6876297
hmmpanther:PTHR14207hmmpanther:PTHR14207:SF0InterPro:IPR007905InterPro:IPR033118KEGG:ath:AT1G20050KO:K01824OMA:YFTTAYL
PANTHER:PTHR14207PaxDb:Q0WRA8Pfam:O48962Pfam:PF05241Pfscan:PS51751PhylomeDB:Q0WRA8PRIDE:Q0WRA8
PROSITE:PS51751RefSeq:NP_173433.1STRING:3702.AT1G20050.1TAIR:AT1G20050tair10-symbols:HYD1TMHMM:TMhelixUniGene:At.10970
UniGene:At.71675UniGene:At.7366UniProt:O48962UniProt:Q0WRA8
Coordinates (TAIR10) chr1:+:6949160..6950135
Molecular Weight (calculated) 25147.70 Da
IEP (calculated) 8.70
GRAVY (calculated) 0.36
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MEELAHPYVP RDLNLPGYVP ISMSMSSIVS IYLGSSLLVV SLVWLLFGRK KAKLDKLLMC WWTFTGLTHV ILEGYFVFSP EFFKDNTSAY LAEVWKEYSK
101: GDSRYVGRDS AVVSVEGITA VIVGPASLLA IYAIAKEKSY SYVLQLAISV CQLYGCLVYF ITAILEGDNF ATNSFYYYSY YIGANCWWVL IPSLISFRCW
201: KKICAAAAIA NNNVETKTKK KTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)