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AT1G17410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.980
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleoside diphosphate kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleoside diphosphate kinase family protein; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1); Has 9030 Blast hits to 8806 proteins in 2558 species: Archae - 289; Bacteria - 4566; Metazoa - 1151; Fungi - 165; Plants - 382; Viruses - 117; Other Eukaryotes - 2360 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0105eggNOG:KOG0888EMBL:CP002684EnsemblPlants:AT1G17410EnsemblPlants:AT1G17410.1entrez:838313ExpressionAtlas:F4I7J3
GeneID:838313GO:GO:0004550GO:GO:0006183GO:GO:0006228GO:GO:0006241Gramene:AT1G17410.1gramene_pathway:2.7.4.6
gramene_pathway:DENOVOPURINE3-PWYgramene_pathway:PWY-5687gramene_pathway:PWY0-166hmmpanther:PTHR11349InParanoid:F4I7J3InterPro:IPR001564KEGG:00230+2.7.4.6
KEGG:00240+2.7.4.6OMA:LCEFMASPaxDb:F4I7J3Pfam:PF00334PRIDE:F4I7J3PRINTS:PR01243ProteinModelPortal:F4I7J3
Proteomes:UP000006548RefSeq:NP_173184.2SMART:SM00562SMR:F4I7J3STRING:3702.AT1G17410.1SUPFAM:SSF54919TAIR:AT1G17410
UniGene:At.41837UniProt:F4I7J3
Coordinates (TAIR10) chr1:-:5968627..5969780
Molecular Weight (calculated) 19991.80 Da
IEP (calculated) 5.93
GRAVY (calculated) -0.14
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGITYQILF LLLLASVSLS PVRCLGYGAS SEERTLAMIK PDGVSGNYTE EIKTIVVEAG FNIVKEMLTQ LDKETASAFY EEHSSRSFFP HLVTYMTSGP
101: VLVMVLEKRN AVSDWRDLIG PTDAEKAKIS HPHSIRALCG KNSQKNCVHG SDSTSSAERE IKFFFKDVVS GDIATQQHDE L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)