AT1G12760.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.989 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Zinc finger, C3HC4 type (RING finger) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Zinc finger, C3HC4 type (RING finger) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:4348941..4350512 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37835.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||
| Length | 337 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MREPSMLVRE AAAEQLEERQ SDWAYSKPVV VLDIVWNLAF VSVATAILVM SRKEHPIMPL RVWLLGYALQ CVLHMVCVCV EYRRRNRRRT NRTTTTTPPR 101: SRSSSSSSSS SSLEEEALGS RRNSGVQDLS LGHLDTESSS VAKHLESANT MFSFIWWIIG FYWVSAGGQE LAQESPRIYW LSIVFLGFDV FFVVFCVALA 201: CVIGIAVCCC LPCIIAVLYA VADQEGASKE DIEQLTKFKF RKLGDANKHT NDEAQGTTEG IMTECGTDSP IEHTLLQEDA ECCICLSAYE DGTELRELPC 301: GHHFHCSCVD KWLYINATCP LCKYNILKSS NLDREEV |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)