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AT1G11950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription factor jumonji (jmjC) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription factor jumonji (jmjC) domain-containing protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTAAeggNOG:KOG1356EMBL:AB493451EMBL:CP002684
EnsemblPlants:AT1G11950EnsemblPlants:AT1G11950.1entrez:837747GeneID:837747
Gramene:AT1G11950.1hmmpanther:PTHR12549hmmpanther:PTHR12549:SF16HOGENOM:HOG000243122
InterPro:IPR003347KEGG:ath:AT1G11950KO:K15601ncoils:Coil
OMA:ICNCTRCPfam:PF02373Pfscan:PS51184PhylomeDB:C0SUU8
PROSITE:PS51184Proteomes:UP000006548Reactome:R-ATH-983231RefSeq:NP_172659.3
SMART:SM00558STRING:3702.AT1G11950.1SUPFAM:SSF51197TAIR:AT1G11950
UniGene:At.42102UniProt:C0SUU8
Coordinates (TAIR10) chr1:-:4034747..4038310
Molecular Weight (calculated) 100151.00 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.60
Length 875 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGEVATNGV ILKHNGVKDI SLETCWPEKK KPVEATSLSS GSSDIEEEIS VECPKRVANQ RRKRSKADEI KTKSSRKRKC DDENKCEENE KKQRSSVKKR
101: ATTWKEEEVV VDDEKKCEQQ LQLVPSSKAT SRSRSKKSVS VDTWLVNNEI DVSALSSRSE SELSDSYLKT EYFNDCRSMT RSLKANLGEL AICHQCSKGE
201: RRYLFICTFC EVRLYCFPCI KKWYPHLSTD DILEKCPFCR GTCNCCTCLH SSGLIETSKR KLDKYERFYH LRFLIVAMLP FLKKLCKAQD QEIETEAKVQ
301: DSMASQVDIS ESLCSNEERV FCNHCATSIV DLHRSCPKCS YELCLNCCQE IRGGWLSDRP ECQLQFEYRG TRYIHGEAAE PSSSSVSEDE TKTPSIKWNA
401: DENGSIRCAP KELGGCGDSV LELKRILPVT WMSDLEQKAE TFLASYSIKP PMSYCRCSSD MSSMKRKAAS RDGSSDNYLY SPDSLDVLKQ EELLHFQEHW
501: SKGEPVIVRN ALNNTAGLSW EPMVMWRALC ENVDSAISSN MSDVKAIDCL ANCEVKINTL CFFEGYSKGR TYENFWPEML KLKDWPPSDK FENLLPRHCD
601: EFISALPFQE YSDPRSGILN IATKLPEGLL KPDLGPKTYV AYGTSDELGR GDSVTKLHCD MSDAVNILMH TAEVTLSEEQ RSAIADLKQK HKQQNEKELQ
701: EQNGLEEEEV VSDEIVVYDE TSGALWDIFK REDVPKLEEY LRKHCIEFRH TYCSRVTKVY HPIHDQSYFL TVEHKRKLKA EFGIEPWTFV QKLGEAVFIP
801: AGCPHQVRNL KSCTKVAVDF VSPENIDECL RLTDEFRQLP KNHKAREDKL EIKKMVIYAV EQALKEVETL LLDRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)