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AT1G08200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : UDP-D-apiose/UDP-D-xylose synthase 2
Curator
Summary (TAIR10)
Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase.
Computational
Description (TAIR10)
UDP-D-apiose/UDP-D-xylose synthase 2 (AXS2); FUNCTIONS IN: UDP-glucuronate decarboxylase activity; INVOLVED IN: nucleotide-sugar biosynthetic process; LOCATED IN: apoplast, cytoplasm; EXPRESSED IN: fruit, guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-D-apiose/UDP-D-xylose synthase 1 (TAIR:AT2G27860.1); Has 18414 Blast hits to 18403 proteins in 2616 species: Archae - 518; Bacteria - 11662; Metazoa - 253; Fungi - 80; Plants - 1043; Viruses - 12; Other Eukaryotes - 4846 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G08200-MONOMERBioGrid:22582eggNOG:COG0451eggNOG:KOG1429EMBL:AC011438EMBL:AY042880EMBL:AY088462
EMBL:BT001220EMBL:CP002684EnsemblPlants:AT1G08200EnsemblPlants:AT1G08200.1entrez:837341Gene3D:3.40.50.720GeneID:837341
Genevisible:Q9SGE0GO:GO:0003824GO:GO:0005737GO:GO:0005829GO:GO:0048046GO:GO:0050662GO:GO:0071555
Gramene:AT1G08200.1gramene_pathway:4.1.1.35gramene_pathway:PWY-4821gramene_plant_reactome:5654894gramene_plant_reactome:6877699hmmpanther:PTHR10366hmmpanther:PTHR10366:SF348
HOGENOM:HOG000261188InParanoid:Q9SGE0InterPro:IPR001509InterPro:IPR016040KEGG:ath:AT1G08200KO:K12449OMA:MANGADR
PaxDb:Q9SGE0Pfam:PF01370Pfam:Q9SGE0PhylomeDB:Q9SGE0PIR:C86216PRIDE:Q9SGE0PRO:PR:Q9SGE0
ProteinModelPortal:Q9SGE0Proteomes:UP000006548RefSeq:NP_563807.1SMR:Q9SGE0STRING:3702.AT1G08200.1SUPFAM:SSF51735TAIR:AT1G08200
tair10-symbols:AXS2UniGene:At.20110UniProt:Q9SGE0
Coordinates (TAIR10) chr1:-:2574259..2576609
Molecular Weight (calculated) 43792.60 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.27
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MANGADRLDL DGKPIKPMTI CMIGAGGFIG SHLCEKLMTE TPHKVLALDV YNDKIKHLLE PDTVQWAGRI QFHRINIKHD SRLEGLIKMA DLTINLAAIC
101: TPADYNTRPL DTIYSNFIDA LPVVKYCSEN NKRLIHFSTC EVYGKTIGSF LPKDHPLRQD PEFYVLKEDI SPCIFGSIEK QRWSYACAKQ LIERLVYAEG
201: AENGLEFTIV RPFNWIGPRM DFIPGIDGPS EGVPRVLACF SNNLLRREPL KLVDGGESQR TFIYIKDAIE AVLLMIENPE RANGHIFNVG NPNNEVTVRQ
301: LAEMMTEVYA KVSGETAIES PTIDVSSKEF YGEGYDDSDK RIPDMTIINR QLGWNPKTSL WDLLESTLTY QHTTYAEAIK KATSKPVAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)