AT1G03770.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING 1B | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RING 1B (RING1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:944772..947431 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52760.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||
| Length | 468 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSLKSFSAA EEEDDQLGRN SEAERFNPEA VEKEEDPDKM DEKDESGDEE DDVKRDQVEA EDEEALGEEE VSDSKERSQS SSAGELSESE YMVVDLADIC 101: KDVQCSICLG IIRKTRTVME CLHRFCRECI DKSMRLGNNE CPTCRKHCAS RRSLRDDPNF DALIAALFKN IDKFEEEELN FRQDDEARNK QIQASIAQVS 201: QRQSKALVKR KSVGKGTAIL SRSRRSGGGS RRRRNCRNIE QDTSEANDDD DQNKRGKDSS SDEPCERQRK KRSATQPSSS NANNNDNCAG NGTEQTHQRD 301: SRVISPVLVW NSELIAWGRG GTRSNTRQGN NNQGAISKRN ARLKRLVEYL GSLEGNSVEL DIHLKLVSLD TEGLLNLHEP YLCFRPTLLV KQLREVSSLP 401: LYVARHLKLK AEEVELLVSK DGDTVIGNKT STEKMQSLQD DETVAKLKVD CISSNGYMIV VYRRKQIA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)