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AT5G66700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : homeobox 53
Curator
Summary (TAIR10)
Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.
Computational
Description (TAIR10)
homeobox 53 (HB53); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent, root development; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 40 (TAIR:AT4G36740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22045eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AB018119
EMBL:AY683477EMBL:BT024847EMBL:CP002688EnsemblPlants:AT5G66700
EnsemblPlants:AT5G66700.1entrez:836803Gene3D:1.10.10.60GeneID:836803
Genevisible:Q9LVR0GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009733GO:GO:0043565GO:GO:0048364
Gramene:AT5G66700.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF281HOGENOM:HOG000034122
InParanoid:Q9LVR0InterPro:IPR000047InterPro:IPR001356InterPro:IPR009057
InterPro:IPR017970KEGG:ath:AT5G66700ncoils:CoilOMA:NSHCIIV
PaxDb:Q9LVR0Pfam:PF00046Pfam:Q9LVR0Pfscan:PS50071
PhylomeDB:Q9LVR0PRIDE:Q9LVR0PRINTS:PR00031PRO:PR:Q9LVR0
PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:Q9LVR0Proteomes:UP000006548
RefSeq:NP_201471.1scanprosite:PS00027SMART:SM00389STRING:3702.AT5G66700.1
SUPFAM:SSF46689TAIR:AT5G66700tair10-symbols:ATHB53tair10-symbols:HB-8
tair10-symbols:HB53UniGene:At.51263UniProt:Q9LVR0
Coordinates (TAIR10) chr5:+:26634406..26635762
Molecular Weight (calculated) 26393.10 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.93
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHGRLMDDQ MMLGSQVYPY TTQPQNSHCI IVNQIDGGEE SKPVKRRRKR RSKGSSATNE EDVAEIGGML RKRKLTDEQV NMLEYSFGNE HKLESGRKEK
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)