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AT5G65960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.497
cytosol 0.395
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial Rho-like (InterPro:IPR013684), Alpha/gamma-adaptin-binding protein p34 (InterPro:IPR019341); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRVHeggNOG:KOG4273EMBL:AY065381EMBL:AY117200
EMBL:CP002688EnsemblPlants:AT5G65960EnsemblPlants:AT5G65960.1entrez:836726
Gene3D:3.40.50.300GeneID:836726GO:GO:0005525GO:GO:0005622
GO:GO:0007264Gramene:AT5G65960.1hmmpanther:PTHR14659hmmpanther:PTHR14659:SF1
InterPro:IPR001806InterPro:IPR019341InterPro:IPR027417KEGG:ath:AT5G65960
OMA:DSLRLMPPfam:PF00071Pfam:PF10199PhylomeDB:Q8VZ15
Proteomes:UP000006548RefSeq:NP_569023.1STRING:3702.AT5G65960.1SUPFAM:SSF52540
TAIR:AT5G65960UniGene:At.28639UniGene:At.9206UniProt:Q8VZ15
Coordinates (TAIR10) chr5:+:26385413..26387197
Molecular Weight (calculated) 43690.40 Da
IEP (calculated) 4.02
GRAVY (calculated) -0.47
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MESRPGVLVV GSSGVGKRTL LSRLLSVEFE DSSESSSQTE VHGWTINTKY YTADVSVCIS HICDEYSLPN LPNSHPLVAL VMVFDLSELS TLVALQDWVS
101: HTDINSFDIL LCIGNKVDRV PHHLAHDEYR RRLLKASDPS RDLYSDIDDF GISETEGSSL LGSEDASLDI RGACLEWCSE NNIEFIEACA SNPDFDKCLS
201: VDGDSQGVER LFGALSAHMW PGMILKSGDR INEPVLPQGE ELSEEESEYE LEYEVLSAGS GDPWDNIEER WVSASETHSH ADAGGSTSQE NLHVENSMVK
301: PNKVDEELLP SGSRLELQND TDRAIVTDEK PLGTENEKCY EFEDVEQLMS EIGNIRDNLR LMPDFQRREI AANLAMKMAS MFGGDTDDEE EPE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)