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AT5G48170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.465
plasma membrane 0.387
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism.
Computational
Description (TAIR10)
SLEEPY2 (SLY2); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G24210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20116DNASU:834869eggNOG:ENOG410IZ9EeggNOG:ENOG410YVBR
EMBL:AB023039EMBL:BT011771EMBL:BT012391EMBL:CP002688
EnsemblPlants:AT5G48170EnsemblPlants:AT5G48170.1entrez:834869GeneID:834869
Genevisible:Q9LUB6GO:GO:0005634GO:GO:0009740GO:GO:0009937
GO:GO:0016567GO:GO:0019005GO:GO:0048831Gramene:AT5G48170.1
hmmpanther:PTHR20995HOGENOM:HOG000239822InParanoid:Q9LUB6IntAct:Q9LUB6
InterPro:IPR001810KEGG:ath:AT5G48170OMA:HYYERLYPaxDb:Q9LUB6
Pfam:PF12937Pfam:Q9LUB6PhylomeDB:Q9LUB6PRO:PR:Q9LUB6
ProteinModelPortal:Q9LUB6Proteomes:UP000006548RefSeq:NP_199628.1SMART:SM00256
STRING:3702.AT5G48170.1SUPFAM:SSF81383TAIR:AT5G48170tair10-symbols:SLY2
UniGene:At.7077UniPathway:UPA00143UniProt:Q9LUB6
Coordinates (TAIR10) chr5:-:19532729..19533202
Molecular Weight (calculated) 17967.00 Da
IEP (calculated) 9.57
GRAVY (calculated) 0.06
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)