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AT5G47680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47680-MONOMEReggNOG:ENOG4111JE4eggNOG:KOG2967EMBL:AB025628
EMBL:AY085531EMBL:BT002419EMBL:BT008829EMBL:CP002688
EnsemblPlants:AT5G47680EnsemblPlants:AT5G47680.1entrez:834819GeneID:834819
GO:GO:0006400GO:GO:0008168GO:GO:0080179Gramene:AT5G47680.1
hmmpanther:PTHR13563hmmpanther:PTHR13563:SF13HOGENOM:HOG000195825InterPro:IPR007356
InterPro:IPR016009InterPro:IPR016653InterPro:IPR028564KEGG:ath:AT5G47680
KO:K15445ncoils:CoilOMA:RNGHIHEPANTHER:PTHR13563
Pfam:PF01746Pfscan:PS51675PhylomeDB:Q9FGI9PIRSF:PIRSF016323
PROSITE:PS51675Proteomes:UP000006548RefSeq:NP_199579.1SMR:Q9FGI9
STRING:3702.AT5G47680.1TAIR:AT5G47680tair10-symbols:AtTRMtair10-symbols:TRM10
UniGene:At.29883UniGene:At.49140UniProt:Q9FGI9
Coordinates (TAIR10) chr5:-:19316329..19317467
Molecular Weight (calculated) 39508.10 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.82
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAATGNDDN GCFDKPESEP APVNVSPPLS KNAQKKQLKQ QRYEAKKAEK KAQEKEHKRK EGERKLKEWE ETLANATEEE RLKLIESRKS LRKERMEKRS
101: EEKEKKIERL NQAKEIGQKI VVDVDFAHLM SESEISSLVQ QIMYCYAVNG RSTSPCHLWL TGVQGKMSTE LDKLPGFEKW FIEKESRCYI EAMADQKDNL
201: VYLTADSETV LDDLDPKHIY IIGGLVDRNR FKGITMTKAQ EQGIKTAKLP IGEYMKMSSS QVLTVNQVLE ILVKFLETRD WKTAFFTVIP QRKRTGLDPV
301: DCSKLEHISE EHQEKDTEAN ESADKHDLLE RKKVCVEVPL ESSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)