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AT5G11610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.946
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G25820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G11610-MONOMERCAZy:GT47eggNOG:ENOG410XTFHeggNOG:KOG1021EMBL:AL163815EMBL:CP002688EnsemblPlants:AT5G11610
EnsemblPlants:AT5G11610.1entrez:831033ExpressionAtlas:Q9LYD1GeneID:831033GO:GO:0016021Gramene:AT5G11610.1hmmpanther:PTHR11062
hmmpanther:PTHR11062:SF108InterPro:IPR004263KEGG:ath:AT5G11610OMA:QPEAIMEPfam:PF03016PhylomeDB:Q9LYD1PIR:T48520
Proteomes:UP000006548RefSeq:NP_196722.1STRING:3702.AT5G11610.1TAIR:AT5G11610TMHMM:TMhelixUniGene:At.22138UniProt:Q9LYD1
Coordinates (TAIR10) chr5:-:3735569..3737952
Molecular Weight (calculated) 63093.30 Da
IEP (calculated) 9.98
GRAVY (calculated) -0.34
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQSRVLRFI GQVETCRVVL LMVLVVAFVS GLQYFELSPV LLSIVSPGNS TISEFRKSND TTKSAENETF LASQEASTGL KPYNRTTEVL KSSEHKFLND
101: SHKIEASGQR RRSNETASSL HPLQPKIPQI RKKYPHRSIT KPPSIVISIK QMNNMILKRH NDPKNSLAPL WGSKVDQELK TARDKIKKAA LVKKDDTLYA
201: PLYHNISIFK RSYELMEQTL KVYVYSEGDR PIFHQPEAIM EGIYASEGWF MKLMESSHRF LTKDPTKAHL FYIPFSSRIL QQKLYVHDSH SRNNLVKYLG
301: NYIDLIASNY PSWNRTCGSD HFFTACHDWA PTETRGPYIN CIRALCNADV GIDFVVGKDV SLPETKVSSL QNPNGKIGGS RPSKRTILAF FAGSLHGYVR
401: PILLNQWSSR PEQDMKIFNR IDHKSYIRYM KRSRFCVCAK GYEVNSPRVV ESILYGCVPV IISDNFVPPF LEILNWESFA VFVPEKEIPN LRKILISIPV
501: RRYVEMQKRV LKVQKHFMWH DGEPVRYDIF HMILHSVWYN RVFQTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)