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AT5G10960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:830963EC:3.1.13.4eggNOG:COG5228eggNOG:KOG0304
EMBL:AL365234EMBL:AY050855EMBL:AY142489EMBL:CP002688
EnsemblPlants:AT5G10960EnsemblPlants:AT5G10960.1entrez:830963Gene3D:3.30.420.10
GeneID:830963Genevisible:Q9LEU4GO:GO:0003723GO:GO:0004535
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355
GO:GO:0046872Gramene:AT5G10960.1hmmpanther:PTHR10797hmmpanther:PTHR10797:SF14
HOGENOM:HOG000173077InParanoid:Q9LEU4InterPro:IPR006941InterPro:IPR012337
iPTMnet:Q9LEU4KEGG:ath:AT5G10960KO:K12581OMA:SIMIREV
PaxDb:Q9LEU4Pfam:PF04857Pfam:Q9LEU4PhylomeDB:Q9LEU4
PIR:T50805PRIDE:Q9LEU4PRO:PR:Q9LEU4ProteinModelPortal:Q9LEU4
Proteomes:UP000006548RefSeq:NP_196657.1SMR:Q9LEU4STRING:3702.AT5G10960.1
SUPFAM:SSF53098TAIR:AT5G10960UniGene:At.25437UniProt:Q9LEU4
Coordinates (TAIR10) chr5:+:3464581..3465414
Molecular Weight (calculated) 31535.10 Da
IEP (calculated) 4.67
GRAVY (calculated) 0.01
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETLKEDSI MIREVWDYNL VEEFALIREI VDKFSYIAMD TEFPGVVLKP VATFKYNNDL NYRTLKENVD LLKLIQVGLT FSDENGNLPT CGTDKFCIWQ
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP LKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)